RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 TFAP2AP05549 437 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 PPARGP37231 505 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 CRADDP78560 199 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF423Q2M1K9 1284 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 SEL1L3Q68CR1 1132 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 STRA8Q7Z7C7 330 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ACOT1Q86TX2 421 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 LRRC52Q8N7C0 313 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 CNTD1Q8N815 330 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ANKRD52Q8NB46 1076 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 LENG1Q96BZ8 264 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 SPATA33Q96N06 139 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 SHCBP1LQ9BZQ2 653 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 UBE2OQ9C0C9 1292 aaKnown RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 IL22Q9GZX6 179 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 TIMMDC1Q9NPL8 285 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 OXSMQ9NWU1 459 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 RIMS3Q9UJD0 308 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 LZTS1Q9Y250 596 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 PAPPA2Q9BXP8 1791 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 GABBR2O75899 941 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 CABYRO75952 493 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 CRTAMO95727 393 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ERVK-10P10266 1014 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 GOT1P17174 413 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 DNAJB2P25686 324 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 PSMB4P28070 264 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 GRM5P41594 1212 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 RPL14P50914 215 aaKnown RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 USP4Q13107 963 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 PAFAH1B3Q15102 231 aaKnown RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 FSTL4Q6MZW2 842 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ZYG11AQ6WRX3 759 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 LRRN4Q8WUT4 740 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 GFM2Q969S9 779 aaKnown RBP16.62■□□□□ 0.25
SHMT2-232ENST00000557487 KIF12Q96FN5 646 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 MPP4Q96JB8 637 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 TSNARE1Q96NA8 513 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 FAM210AQ96ND0 272 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 LGMNQ99538 433 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 BRD8Q9H0E9 1235 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF385DQ9H6B1 395 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 AP4B1Q9Y6B7 739 aa16.62■□□□□ 0.25
SHMT2-232ENST00000557487 A0A1B0GVG6 124 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 AIM2O14862 343 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 VILLO15195 856 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 MTSS1O43312 755 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 MFSD11O43934 449 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 BCAS2O75934 225 aaPredicted RBP16.61■□□□□ 0.25
SHMT2-232ENST00000557487 GJB1P08034 283 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 FAM58BPP0C7Q3 252 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 ETS2P15036 469 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 ME2P23368 584 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 MATKP42679 507 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 LIPMQ5VYY2 423 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 SNX32Q86XE0 403 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 CCDC185Q8N715 623 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 URGCPQ8TCY9 931 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 EFCAB1Q9HAE3 211 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 ERAP1Q9NZ08 941 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 GMEB1Q9Y692 573 aa16.61■□□□□ 0.25
SHMT2-232ENST00000557487 PRSS51A0A1B0GVH4 220 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 UNCXA6NJT0 531 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 NCAM2O15394 837 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ADCY6O43306 1168 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ARIH2O95376 493 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 AP2A1O95782 977 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 SRGAP2BP0DMP2 458 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 COL6A2P12110 1019 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ARF4P18085 180 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 TFE3P19532 575 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 MLH1P40692 756 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 POLD2P49005 469 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 NPY2RP49146 381 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 NR1H2P55055 460 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 HUNKP57058 714 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 APOFQ13790 326 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 DCAF4L1Q3SXM0 396 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 SLC25A52Q3SY17 297 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 KLC3Q6P597 504 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 NAPRTQ6XQN6 538 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 RBM44Q6ZP01 1051 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 CMC1Q7Z7K0 106 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ZNF567Q8N184 647 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 LINC01465Q8N7H1 131 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 RNF139Q8WU17 664 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 TRAPPC12Q8WVT3 735 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 KBTBD7Q8WVZ9 684 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 TOP1MTQ969P6 601 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 MRPL45Q9BRJ2 306 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 GATA5Q9BWX5 397 aaPredicted RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 B3GNT5Q9BYG0 378 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 SPATC1LQ9H0A9 340 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 RBM38Q9H0Z9 239 aaKnown RBP16.6■□□□□ 0.25
SHMT2-232ENST00000557487 CLIC5Q9NZA1 410 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 VANGL2Q9ULK5 521 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 ZMPSTE24O75844 475 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 C2P06681 752 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 SERPINB5P36952 375 aa16.6■□□□□ 0.25
SHMT2-232ENST00000557487 AIF1P55008 147 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms