RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 STAT1P42224 750 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 NOVA1P51513 510 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SGSHP51688 502 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 COPAP53621 1224 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FANCCQ00597 558 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 DEUP1Q05D60 604 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 KCNMA1Q12791 1236 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 AUHQ13825 339 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 HNRNPA1L2Q32P51 320 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ARL13BQ3SXY8 428 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SLC25A52Q3SY17 297 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ACCSLQ4AC99 568 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PTPN20Q4JDL3 420 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 BRMS1LQ5PSV4 323 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ZNF776Q68DI1 518 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 RBM43Q6ZSC3 357 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 DSG4Q86SJ6 1040 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 CCAR2Q8N163 923 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SNX19Q92543 992 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SKA1Q96BD8 255 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ALKBH8Q96BT7 664 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 OMDQ99983 421 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 NAA15Q9BXJ9 866 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SGK2Q9HBY8 427 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PRSS16Q9NQE7 514 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 VANGL2Q9ULK5 521 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ATXN2Q99700 1313 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 OBSL1O75147 1896 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 KIF26AQ9ULI4 1882 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ATG2BQ96BY7 2078 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 EDDM13A0A1B0GTR0 161 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 A0A1B0GTW7 788 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ANKRD62A6NC57 917 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SMTNL1A8MU46 457 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 METTL12A8MUP2 240 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 TM4SF5O14894 197 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 BCAT2O15382 392 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 DAB1O75553 588 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 GFPT2O94808 682 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 KCNK5O95279 499 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 IGLV3-19P01714 112 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 CDH5P33151 784 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SOX5P35711 763 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 NSFP46459 744 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 GABRB2P47870 512 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SULT1E1P49888 294 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 AFF3P51826 1226 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 KRT83P78385 493 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 CCDC15Q0P6D6 951 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SLC14A1Q13336 389 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ARID5BQ14865 1188 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 TEAD4Q15561 434 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FILIP1LQ4L180 1135 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FSCBQ5H9T9 825 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PITRM1Q5JRX3 1037 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 COX20Q5RI15 118 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SH3PXD2AQ5TCZ1 1133 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 CDKAL1Q5VV42 579 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PEAR1Q5VY43 1037 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PSAPL1Q6NUJ1 521 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FBXL22Q6P050 247 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 IL27RAQ6UWB1 636 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 TRIM72Q6ZMU5 477 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SLC41A1Q8IVJ1 513 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ZNF366Q8N895 744 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 CPA5Q8WXQ8 436 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 DNASE2BQ8WZ79 361 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 PRICKLE1Q96MT3 831 aaPredicted RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 TKTL2Q9H0I9 626 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 MUC3BQ9H195 1237 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 NLRC4Q9NPP4 1024 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FBXL12Q9NXK8 326 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 XPO7Q9UIA9 1087 aaKnown RBP7.55□□□□□ -1.2
SCFD1-222ENST00000556768 SLC25A13Q9UJS0 675 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 VPS28Q9UK41 221 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 ERVW-1Q9UQF0 538 aa7.55□□□□□ -1.2
SCFD1-222ENST00000556768 FAM47DPA6NHR8 397 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 LRRC10BA6NIK2 292 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 LRRC72A6NJI9 287 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 GOLGA8SH3BPF8 625 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 CDX4O14627 284 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 PAGE1O75459 146 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 SEMA4FO95754 770 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 MMEP08473 750 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 PDGFRAP16234 1089 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 CSRP1P21291 193 aaKnown RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 MAOBP27338 520 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 COPB1P53618 953 aaKnown RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 CDH4P55283 916 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 CDR2Q01850 454 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 EIF4EBP2Q13542 120 aaPredicted RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 HNRNPDQ14103 355 aaKnown RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 ELAVL3Q14576 367 aaKnown RBP7.54□□□□□ -1.2
SCFD1-222ENST00000556768 DCAF12L1Q5VU92 463 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 FAM46CQ5VWP2 391 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 NAA35Q5VZE5 725 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 MMS22LQ6ZRQ5 1243 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 USP30Q70CQ3 517 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 ARCQ7LC44 396 aa7.54□□□□□ -1.2
SCFD1-222ENST00000556768 ADAT2Q7Z6V5 191 aaKnown RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms