RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 DPYSL2Q16555 572 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 CA9Q16790 459 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 HSF5Q4G112 596 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 KCNT1Q5JUK3 1230 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MANEALQ5VSG8 457 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MFSD7Q6UXD7 560 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ZNF783Q6ZMS7 281 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 TFAP2DQ7Z6R9 452 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MAP7D3Q8IWC1 876 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 ZNF683Q8IZ20 524 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 PHTF2Q8N3S3 785 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 PRELID2Q8N945 189 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 CLDN23Q96B33 292 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 RNF25Q96BH1 459 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MYEOVQ96EZ4 313 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 AP1M1Q9BXS5 423 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 CIPCQ9C0C6 399 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MUC3BQ9H195 1237 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 LMAN1LQ9HAT1 526 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 GPATCH2LQ9NWQ4 482 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MPP6Q9NZW5 540 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 FBXO10Q9UK96 956 aa11.2□□□□□ -0.62
SHMT2-218ENST00000555213 MTF2Q9Y483 593 aaPredicted RBP11.2□□□□□ -0.62
SHMT2-218ENST00000555213 KIAA1549LQ6ZVL6 1849 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 UQCRHLA0A096LP55 91 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 A0A0A0MRY4 1105 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 PGRMC1O00264 195 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 RNF40O75150 1001 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 DCNP07585 359 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 UQCRHP07919 91 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CISD3P0C7P0 127 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 POLR2EP19388 210 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 HOXC13P31276 330 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CD70P32970 193 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CDKN2BP42772 138 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 PAFAH1B1P43034 410 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CDH6P55285 790 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 SEC13P55735 322 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 MRPS21P82921 87 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 SULT2A1Q06520 285 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CKAP4Q07065 602 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 LMAN2Q12907 356 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 SEMA3BQ13214 749 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 PDK2Q15119 407 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 LONRF2Q1L5Z9 754 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 ALFQ53S48 1182 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 PITRM1Q5JRX3 1037 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 RNF219Q5W0B1 726 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 SDE2Q6IQ49 451 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 SPOCD1Q6ZMY3 1216 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 RFX8Q6ZV50 586 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 PYROXD2Q8N2H3 581 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 ZNF513Q8N8E2 541 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 RTL3Q8N8U3 475 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 MNS1Q8NEH6 495 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 KCTD15Q96SI1 283 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 LRRC1Q9BTT6 524 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 C2orf49Q9BVC5 232 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CHRDQ9H2X0 955 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 ANKZF1Q9H8Y5 726 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 FBRSL1Q9HCM7 1045 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 KLHL11Q9NVR0 708 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 TMEM248Q9NWD8 314 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 DDX56Q9NY93 547 aaKnown RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 RCOR3Q9P2K3 495 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 VPS28Q9UK41 221 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 CLEC4EQ9ULY5 219 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 TBC1D30Q9Y2I9 924 aa11.19□□□□□ -0.62
SHMT2-218ENST00000555213 ARIH1Q9Y4X5 557 aaPredicted RBP11.19□□□□□ -0.62
SHMT2-218ENST00000555213 ILVBLA1L0T0 632 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 FAM72CH0Y354 149 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 TRIM24O15164 1050 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 RAMP2O60895 175 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 CNTN5O94779 1100 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 KRT1P04264 644 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 ASLP04424 464 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 KRT10P13645 584 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 PTPN7P35236 360 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 CSKP41240 450 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 HCAR3P49019 387 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 IRAK1P51617 712 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 COPS2P61201 443 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 ST8SIA6P61647 398 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 MRPS25P82663 173 aaKnown RBP11.18□□□□□ -0.62
SHMT2-218ENST00000555213 CYP1B1Q16678 543 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 GEN1Q17RS7 908 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 PLEKHG6Q3KR16 790 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 FUT11Q495W5 492 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 C2orf27AQ580R0 203 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 FAM72AQ5TYM5 149 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 MBLAC2Q68D91 279 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 FAM72DQ6L9T8 149 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 CXorf57Q6NSI4 855 aaKnown RBP11.18□□□□□ -0.62
SHMT2-218ENST00000555213 ADAT2Q7Z6V5 191 aaKnown RBP11.18□□□□□ -0.62
SHMT2-218ENST00000555213 FAM72BQ86X60 149 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 CHPFQ8IZ52 775 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 ZNF687Q8N1G0 1237 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 SPEM1Q8N4L4 309 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 KCTD6Q8NC69 237 aa11.18□□□□□ -0.62
SHMT2-218ENST00000555213 RPLP0P6Q8NHW5 317 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms