RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 RPS6KL1Q9Y6S9 549 aa13.03□□□□□ -0.32
VIPAS39-206ENST00000553888 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 ZBBXA8MT70 800 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 J3KR12 359 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 FAM107AO95990 144 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC20A2Q08357 652 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC1A5Q15758 541 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 CERCAMQ5T4B2 595 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 GET4Q7L5D6 327 aaPredicted RBP13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 KLHL5Q96PQ7 755 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 YME1L1Q96TA2 773 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 BACE2Q9Y5Z0 518 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 RAD54BQ9Y620 910 aa13.02□□□□□ -0.32
VIPAS39-206ENST00000553888 C2orf78A6NCI8 922 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 FGF10O15520 208 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 HLA-DQB2P05538 268 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 DRD4P21917 467 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 SLC6A4P31645 630 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 KCTD11Q693B1 232 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 TTC16Q8NEE8 873 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ZNF461Q8TAF7 563 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 SPOCK2Q92563 424 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 CENPTQ96BT3 561 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 RPRD1AQ96P16 312 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 FRMD8Q9BZ67 464 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 YIPF1Q9Y548 306 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 PCDHA11Q9Y5I1 949 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 OBSL1O75147 1896 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 A6NNZ2 444 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 COCHO43405 550 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ATP9BO43861 1147 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 AP2A1O95782 977 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 IGLV3-27P01718 113 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 INHBAP08476 426 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 IRF1P10914 325 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ZNF135P52742 658 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 DSG1Q02413 1049 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ZKSCAN8Q15776 578 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 TUBB8Q3ZCM7 444 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 CHSY1Q86X52 802 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ZNF354CQ86Y25 554 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 DNAJC5GQ8N7S2 189 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 DNAAF3Q8N9W5 541 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 GSDMBQ8TAX9 411 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 C2orf15Q8WU43 125 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 CHMP6Q96FZ7 201 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 BTN2A3PQ96KV6 586 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 C1orf74Q96LT6 269 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 FCRL3Q96P31 734 aaPredicted RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 SMC6Q96SB8 1091 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 TTLL2Q9BWV7 592 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 UBE2OQ9C0C9 1292 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 NACA2Q9H009 215 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 RNF38Q9H0F5 515 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ATXN3LQ9H3M9 355 aa13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 EIF2B3Q9NR50 452 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 AFF4Q9UHB7 1163 aaKnown RBP13.02□□□□□ -0.33
VIPAS39-206ENST00000553888 ZNF840PA6NDX5 716 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 FAM47DPA6NHR8 397 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SDR42E2A6NKP2 422 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 TCP11X1B4DZS4 312 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 GJB3O75712 270 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 ABLIM3O94929 683 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 VIMP08670 466 aaKnown RBP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 CA4P22748 312 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 FOXN2P32314 431 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 STX2P32856 288 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 MAXP61244 160 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SARNPP82979 210 aaKnown RBP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 TWF1Q12792 350 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SMARCB1Q12824 385 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 AFMIDQ63HM1 303 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 ATP6V0D2Q8N8Y2 350 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 ZYG11BQ9C0D3 744 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 CXXC1Q9P0U4 656 aaPredicted RBP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 ACTL7AQ9Y615 435 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 TYROBPO43914 113 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 PRKCHP24723 683 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 CCNCP24863 283 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 CYP2S1Q96SQ9 504 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 OLA1Q9NTK5 396 aaKnown RBP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 RBM22Q9NW64 420 aaKnown RBP eCLIP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SMPD4Q9NXE4 827 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SPG21Q9NZD8 308 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 SLC17A7Q9P2U7 560 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 IPO11Q9UI26 975 aaKnown RBP13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 PSAT1Q9Y617 370 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 IKBKGQ9Y6K9 419 aa13.01□□□□□ -0.33
VIPAS39-206ENST00000553888 CHD9Q3L8U1 2897 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 TRIM49D1C9J1S8 452 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 TOP3BO95985 862 aaKnown RBP13□□□□□ -0.33
VIPAS39-206ENST00000553888 ERVK-10P10266 1014 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 SLC2A3P11169 496 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 TSHRP16473 764 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 RFC2P35250 354 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 ACVRL1P37023 503 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 TUFMP49411 452 aaKnown RBP13□□□□□ -0.33
VIPAS39-206ENST00000553888 SGSHP51688 502 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 CRYMQ14894 314 aa13□□□□□ -0.33
VIPAS39-206ENST00000553888 NECAB2Q7Z6G3 386 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms