RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 SPON2Q9BUD6 331 aa23.4■■□□□ 1.34
TDP1-206ENST00000553569 EPC1Q9H2F5 836 aa23.4■■□□□ 1.34
TDP1-206ENST00000553569 SEMA4AQ9H3S1 761 aa23.4■■□□□ 1.34
TDP1-206ENST00000553569 VPS51Q9UID3 782 aa23.4■■□□□ 1.34
TDP1-206ENST00000553569 SLCO3A1Q9UIG8 710 aa23.4■■□□□ 1.34
TDP1-206ENST00000553569 NYNRINQ9P2P1 1898 aaKnown RBP23.4■■□□□ 1.34
TDP1-206ENST00000553569 ILVBLA1L0T0 632 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 TTC34A8MYJ7 566 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 EEF2KO00418 725 aaKnown RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 DCLK1O15075 740 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 LMNAP02545 664 aaKnown RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 KRT83P78385 493 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 GNA12Q03113 381 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 PPP6R3Q5H9R7 873 aaPredicted RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 KCNT1Q5JUK3 1230 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 CPNE8Q86YQ8 564 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 CCDC170Q8IYT3 715 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 DCAF4L2Q8NA75 395 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 C2orf49Q9BVC5 232 aaPredicted RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 MKRN2Q9H000 416 aaKnown RBP23.39■■□□□ 1.33
TDP1-206ENST00000553569 ATP13A1Q9HD20 1204 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 IMPACTQ9P2X3 320 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 SUN2Q9UH99 717 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 RAB23Q9ULC3 237 aa23.39■■□□□ 1.33
TDP1-206ENST00000553569 PRR23AA6NEV1 266 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 FECHP22830 423 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 GLDCP23378 1020 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 GJC1P36383 396 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 NNMTP40261 264 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 MAGEA1P43355 309 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 COPAP53621 1224 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 SLC25A11Q02978 314 aaKnown RBP23.38■■□□□ 1.33
TDP1-206ENST00000553569 CAMK2GQ13555 558 aaPredicted RBP23.38■■□□□ 1.33
TDP1-206ENST00000553569 SPA17Q15506 151 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 HNRNPA1L2Q32P51 320 aaKnown RBP23.38■■□□□ 1.33
TDP1-206ENST00000553569 ZNF783Q6ZMS7 281 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 ASCL5Q7RTU5 278 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 TMPRSS6Q8IU80 811 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 TMTC1Q8IUR5 882 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 RTL3Q8N8U3 475 aaKnown RBP23.38■■□□□ 1.33
TDP1-206ENST00000553569 KDM1BQ8NB78 822 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 OR2T3Q8NH03 318 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 SLC35G2Q8TBE7 412 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 RFFLQ8WZ73 363 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 SPACA7Q96KW9 195 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 CATSPERBQ9H7T0 1116 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 PRDM16Q9HAZ2 1276 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 PRSS16Q9NQE7 514 aa23.38■■□□□ 1.33
TDP1-206ENST00000553569 GOLGA6L6A8MZA4 724 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 CBX4O00257 560 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 SIN3BO75182 1162 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 PROSCO94903 275 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 ACVRL1P37023 503 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 MESDQ14696 234 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 ACCSLQ4AC99 568 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 IL31Q6EBC2 164 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 TXNRD3NBQ6F5E7 133 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 LINGO4Q6UY18 593 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 KBTBD6Q86V97 674 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 PSTKQ8IV42 348 aaKnown RBP23.37■■□□□ 1.33
TDP1-206ENST00000553569 RHOT2Q8IXI1 618 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 SUMF1Q8NBK3 374 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 RETREG1Q9H6L5 497 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 CD93Q9NPY3 652 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.37■■□□□ 1.33
TDP1-206ENST00000553569 INTUQ9ULD6 942 aa23.37■■□□□ 1.33
TDP1-206ENST00000553569 CHD5Q8TDI0 1954 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 PLXND1Q9Y4D7 1925 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 EDDM13A0A1B0GTR0 161 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 EIF3CLB5ME19 914 aaKnown RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 FGF10O15520 208 aaPredicted RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 DAPK3O43293 454 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 RAMP2O60895 175 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 RARAP10276 462 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 VAV1P15498 845 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 GOT1P17174 413 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 BCKDHBP21953 392 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 HTR7P34969 479 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 BOLA3Q53S33 107 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 RFX8Q6ZV50 586 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 ZNF354CQ86Y25 554 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 FAM160A2Q8N612 972 aaPredicted RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 FRMD1Q8N878 549 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 PRCCQ92733 491 aaPredicted RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 SIPA1Q96FS4 1042 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 EIF3CQ99613 913 aaKnown RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 BAG1Q99933 345 aaPredicted RBP23.36■■□□□ 1.33
TDP1-206ENST00000553569 CYP8B1Q9UNU6 501 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 PCDHA13Q9Y5I0 950 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 SPAG17Q6Q759 2223 aa23.36■■□□□ 1.33
TDP1-206ENST00000553569 GFRA3O60609 400 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 NDUFA10O95299 355 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 LCA5LO95447 670 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 ETFBP38117 255 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 P2RY2P41231 377 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 MRE11P49959 708 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 HADHQ16836 314 aaKnown RBP23.35■■□□□ 1.33
TDP1-206ENST00000553569 MAP7D1Q3KQU3 841 aa23.35■■□□□ 1.33
TDP1-206ENST00000553569 RAD9BQ6WBX8 426 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms