RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PDZD4Q76G19 769 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 STRADAQ7RTN6 431 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 YTHDF3Q7Z739 585 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TREML1Q86YW5 311 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TOP6BLQ8N6T0 577 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 SMC1BQ8NDV3 1235 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TEKT4Q8WW24 435 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 N4BP2L2Q92802 583 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 UTP4Q969X6 686 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PHF21BQ96EK2 531 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 OXNAD1Q96HP4 312 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RPRD1AQ96P16 312 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RTP3Q9BQQ7 232 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 MLPHQ9BV36 600 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 OSBPL1AQ9BXW6 950 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 SLC39A8Q9C0K1 460 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 XAB2Q9HCS7 855 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 WDR6Q9NNW5 1121 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TXLNGQ9NUQ3 528 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 GDAP2Q9NXN4 497 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 GMIPQ9P107 970 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TLK1Q9UKI8 766 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RUVBL2Q9Y230 463 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CRYL1Q9Y2S2 319 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PLLPQ9Y342 182 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PCDHA11Q9Y5I1 949 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TET1Q8NFU7 2136 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 E7ESA3 106 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 HAS3O00219 553 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PRPF4O43172 522 aaKnown RBP eCLIP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 GCATO75600 419 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 DCTN3O75935 186 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 KRT36O76013 467 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 ALDOAP04075 364 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CHRNGP07510 517 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 T-ENOLP0DO92 83 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 AXLP30530 894 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CD68P34810 354 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PTPN7P35236 360 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PGM1P36871 562 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RASSF2P50749 326 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 MCCD1P59942 119 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 ADAM17P78536 824 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CDC42EP1Q00587 391 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 XRCC4Q13426 336 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 THOC5Q13769 683 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 KPNB1Q14974 876 aaKnown RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 TAZQ16635 292 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 UPP1Q16831 310 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 GEN1Q17RS7 908 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 LACTB2Q53H82 288 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CLNKQ7Z7G1 428 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 KCNMB4Q86W47 210 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CNTD1Q8N815 330 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 FAM13CQ8NE31 585 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 BLOC1S5Q8TDH9 187 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 AUTS2Q8WXX7 1259 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 ARNTL2Q8WYA1 636 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 RSPH1Q8WYR4 309 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 CERS2Q96G23 380 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 DMAP1Q9NPF5 467 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PRDM5Q9NQX1 630 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 FBXW11Q9UKB1 542 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 LRFN2Q9ULH4 789 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PLA2G4CQ9UP65 541 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 SLC12A4Q9UP95 1085 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 STARD13Q9Y3M8 1113 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.71□□□□□ -1.5
LIMA1-215ENST00000552823 AK5Q9Y6K8 562 aa5.71□□□□□ -1.5
LIMA1-215ENST00000552823 PARP14Q460N5 1801 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 C9JVG2 144 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DPYSL4O14531 572 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 AIM2O14862 343 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DNAJC8O75937 253 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PRSS56P0CW18 603 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CCNB1P14635 433 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SERPINB5P36952 375 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MPP3Q13368 585 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CSHL1Q14406 222 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GRM3Q14832 879 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PARP6Q2NL67 630 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ANKRD20A4Q4UJ75 823 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 INTS6LQ5JSJ4 861 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 LAYNQ6UX15 382 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 RTN4RL1Q86UN2 441 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 CHSY1Q86X52 802 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 PSTKQ8IV42 348 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 EFHBQ8N7U6 833 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 KLHDC9Q8NEP7 349 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 MZB1Q8WU39 189 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 FBXO32Q969P5 355 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 ELMO2Q96JJ3 720 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 TSNARE1Q96NA8 513 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 DENND2DQ9H6A0 471 aaPredicted RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SARS2Q9NP81 518 aaKnown RBP5.7□□□□□ -1.5
LIMA1-215ENST00000552823 STARD7Q9NQZ5 370 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 SNX15Q9NRS6 342 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 GKN1Q9NS71 199 aa5.7□□□□□ -1.5
LIMA1-215ENST00000552823 OSER1Q9NX31 292 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms