RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 OTOP3Q7RTS5 596 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 STRA8Q7Z7C7 330 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 KLHDC9Q8NEP7 349 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 SUSD3Q96L08 255 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ZNF778Q96MU6 729 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 CHRAC1Q9NRG0 131 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 SNX15Q9NRS6 342 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 TRMT13Q9NUP7 481 aaKnown RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 ZNF358Q9NW07 568 aa18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 NKX1-2Q9UD57 310 aaPredicted RBP18.93■□□□□ 0.62
PRPF40B-208ENST00000548436 MYLKQ15746 1914 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 FNDC1Q4ZHG4 1894 aaPredicted RBP18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 IRAK2O43187 625 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 PEX11AO75192 247 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 MAGEA12P43365 314 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 CDK18Q07002 472 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 HSP90AA5PQ58FG0 334 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 ATG14Q6ZNE5 492 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 THEM5Q8N1Q8 247 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 PPP1R14CQ8TAE6 165 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 USP33Q8TEY7 942 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 DENND2DQ9H6A0 471 aaPredicted RBP18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 NOP53Q9NZM5 478 aaKnown RBP18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 SFMBT1Q9UHJ3 866 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 MCM8Q9UJA3 840 aa18.92■□□□□ 0.62
PRPF40B-208ENST00000548436 FRMPD3Q5JV73 1810 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 CAPN14A8MX76 684 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 DFFAO00273 331 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 GSC2O15499 205 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 CA12O43570 354 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 B4GALT3O60512 393 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 NPY2RP49146 381 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 SLC5A3P53794 718 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 PRKCZQ05513 592 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 FRG1Q14331 258 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 INSCQ1MX18 579 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ARTNQ5T4W7 220 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 FSTL4Q6MZW2 842 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 BEND5Q7L4P6 421 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ZNF598Q86UK7 904 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 TREML1Q86YW5 311 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 C10orf107Q8IVU9 208 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ARHGAP12Q8IWW6 846 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ISL2Q96A47 359 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 EBF4Q9BQW3 602 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 WWP1Q9H0M0 922 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 PPARGC1AQ9UBK2 798 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 TNFRSF10BO14763 440 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 MSI1O43347 362 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ESRRAP11474 423 aaPredicted RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 SPRP35270 261 aaPredicted RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ABCG1P45844 678 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 SLC1A6P48664 564 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 LIMK2P53671 638 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 CAP1Q01518 475 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 TSPY1Q01534 308 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 SREBF2Q12772 1141 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 MAPRE1Q15691 268 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 TRIM71Q2Q1W2 868 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 RFWD3Q6PCD5 774 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 PLD6Q8N2A8 252 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 CASP10Q92851 521 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ZNF419Q96HQ0 510 aaPredicted RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 UROC1Q96N76 676 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ABCC13Q9NSE7 274 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 TAS2R1Q9NYW7 299 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 ADAM28Q9UKQ2 775 aa18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 MRPL42Q9Y6G3 142 aaKnown RBP18.91■□□□□ 0.62
PRPF40B-208ENST00000548436 GYG2O15488 501 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 PAGE1O75459 146 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 OR4Q2P0C623 313 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 NMBRP28336 390 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 CYP2C18P33260 490 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 GRIK1P39086 918 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 BTBD8Q5XKL5 378 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 SCD5Q86SK9 330 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 KCNMB4Q86W47 210 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 SPATA2LQ8IUW3 424 aaPredicted RBP18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 SPATA22Q8NHS9 363 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 TTC8Q8TAM2 541 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 TSGA13Q96PP4 275 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 HAPLN3Q96S86 360 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 IL22Q9GZX6 179 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 COPG2Q9UBF2 871 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 NUDT5Q9UKK9 219 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 SOX13Q9UN79 622 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 C15orf41Q9Y2V0 281 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 HTTP42858 3142 aa18.9■□□□□ 0.62
PRPF40B-208ENST00000548436 MAGEB16A2A368 324 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 CACNG3O60359 315 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 WASHC2DQ5SRD0 308 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 KLHDC8BQ8IXV7 354 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 TRIM62Q9BVG3 475 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 CAB39LQ9H9S4 337 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 RNPEPL1Q9HAU8 725 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 C20orf96Q9NUD7 363 aaPredicted RBP18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 NDFIP2Q9NV92 336 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 DNAJC16Q9Y2G8 782 aa18.89■□□□□ 0.62
PRPF40B-208ENST00000548436 GOLGA8TH3BQL2 631 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms