RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	EGF	P01133	1207 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TCP1	P17987	556 aa	Known RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	MX2	P20592	715 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TGM2	P21980	687 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TNFRSF4	P43489	277 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	ST8SIA6	P61647	398 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	GBE1	Q04446	702 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SULT2A1	Q06520	285 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SIGLEC14	Q08ET2	396 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	MESP2	Q0VG99	397 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	PAFAH1B3	Q15102	231 aa	Known RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TAZ	Q16635	292 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	LONRF2	Q1L5Z9	754 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	FUT11	Q495W5	492 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TMEM196	Q5HYL7	178 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SLC9A4	Q6AI14	798 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	FSTL4	Q6MZW2	842 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	RETSAT	Q6NUM9	610 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	NPNT	Q6UXI9	565 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	BBS12	Q6ZW61	710 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	ADAT2	Q7Z6V5	191 aa	Known RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	ATPAF2	Q8N5M1	289 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	NPW	Q8N729	165 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	PLD5	Q8N7P1	536 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TERB1	Q8NA31	727 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	CCNY	Q8ND76	341 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	FLCN	Q8NFG4	579 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	CCDC26	Q8TAB7	109 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	CYB5D2	Q8WUJ1	264 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SORCS1	Q8WY21	1168 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	P3H4	Q92791	437 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	ARHGEF2	Q92974	986 aa	Known RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	OSBPL9	Q96SU4	736 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	NELL2	Q99435	816 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	TBC1D17	Q9HA65	648 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SP110	Q9HB58	689 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	ELOVL2	Q9NXB9	296 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SAE1	Q9UBE0	346 aa	Predicted RBP	10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SLC25A13	Q9UJS0	675 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	SNX12	Q9UMY4	172 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	EFR3B	Q9Y2G0	817 aa		10.4	□□□□□ -0.74
CPSF7-221	ENST00000543545	DENND4A	Q7Z401	1863 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	KANSL1L	A0AUZ9	987 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545		H7C0C1	242 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	KIF2A	O00139	706 aa	Predicted RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NCAM2	O15394	837 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	KDELR3	O43731	214 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	MFSD11	O43934	449 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	SNAP91	O60641	907 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	FGG	P02679	453 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	TUBB4A	P04350	444 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	ASL	P04424	464 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	PTPN7	P35236	360 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	TIE1	P35590	1138 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NNMT	P40261	264 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	CTSO	P43234	321 aa	Predicted RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	ATP5O	P48047	213 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NR2C2	P49116	596 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	PLK1	P53350	603 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	STARD6	P59095	220 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	ECT2L	Q008S8	904 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	ADCY2	Q08462	1091 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LRRC32	Q14392	662 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	PDK1	Q15118	436 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	FNDC3B	Q53EP0	1204 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	C2orf27A	Q580R0	203 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	EMC10	Q5UCC4	262 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LEKR1	Q6ZMV7	388 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	TRIM67	Q6ZTA4	783 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NYAP1	Q6ZVC0	841 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	ADIPOR2	Q86V24	386 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC13A5	Q86YT5	568 aa	Predicted RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	SFTPA1	Q8IWL2	248 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	TP53INP2	Q8IXH6	220 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	PHTF2	Q8N3S3	785 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	DCAF4L2	Q8NA75	395 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	COG1	Q8WTW3	980 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NSMCE1	Q8WV22	266 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	MAIP1	Q8WWC4	291 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LMLN	Q96KR4	655 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	CAPZA3	Q96KX2	299 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	RPL10L	Q96L21	214 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	FOXQ1	Q9C009	403 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	KLC2	Q9H0B6	622 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	NOL6	Q9H6R4	1146 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LRRC19	Q9H756	370 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LMAN1L	Q9HAT1	526 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	LTB4R2	Q9NPC1	389 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	RBM12	Q9NTZ6	932 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	IPO11	Q9UI26	975 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	INTS6	Q9UL03	887 aa	Known RBP	10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	SLC8A2	Q9UPR5	921 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	SAR1B	Q9Y6B6	198 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545	C5orf42	Q9H799	3197 aa		10.39	□□□□□ -0.75
CPSF7-221	ENST00000543545		K7EQS6	105 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	APOC4-APOC2	K7ER74	178 aa		10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	PPP1R12A	O14974	1030 aa	Predicted RBP	10.38	□□□□□ -0.75
CPSF7-221	ENST00000543545	ZNF185	O15231	689 aa		10.38	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms