RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 GUCY1A3Q02108 690 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MLLT1Q03111 559 aaPredicted RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CCL14Q16627 93 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TIGD6Q17RP2 521 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 FAM183BPQ6ZVS7 135 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SLC26A11Q86WA9 606 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ATAD1Q8NBU5 361 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 NOA1Q8NC60 698 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MED8Q96G25 268 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PLEKHA8Q96JA3 519 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 NIFKQ9BYG3 293 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 GANQ9H2C0 597 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PABPC3Q9H361 631 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CYP4F12Q9HCS2 524 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CDV3Q9UKY7 258 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ARL2BPQ9Y2Y0 163 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MEI4A8MW99 385 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 APOC4-APOC2K7ER74 178 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ZNF862O60290 1169 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PPP1R37O75864 691 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 GJB6O95452 261 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 FAM107AO95990 144 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 APOC2P02655 101 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 DNTTP04053 509 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PRLRP16471 622 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CDH2P19022 906 aaPredicted RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PEX5P50542 639 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ZNF470Q6ECI4 717 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SETD3Q86TU7 594 aaPredicted RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CPA6Q8N4T0 437 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SERPINB12Q96P63 405 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 FAM111AQ96PZ2 611 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TRIM8Q9BZR9 551 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CCDC90BQ9GZT6 254 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ZNF556Q9HAH1 456 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 AHSPQ9NZD4 102 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 WARS2Q9UGM6 360 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CLDN5O00501 218 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 KLHL2O95198 593 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 VAPBO95292 243 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 NFATC1O95644 943 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 STAU1O95793 577 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 RECKO95980 971 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TPBGLP0DKB5 382 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MLNP12872 115 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CCL5P13501 91 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TNNI3P19429 210 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ZNF143P52747 638 aaPredicted RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 POM121L1PQ3SYA9 428 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PRR23CQ6ZRP0 262 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MARK2Q7KZI7 788 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SH3RF1Q7Z6J0 888 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TRIM74Q86UV6 250 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TRIM73Q86UV7 250 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SH2D3CQ8N5H7 860 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 SCLYQ96I15 445 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TBL1YQ9BQ87 522 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MLPHQ9BV36 600 aaPredicted RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 DUSP16Q9BY84 665 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 VIPAS39Q9H9C1 493 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 STOML1Q9UBI4 398 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MTRRQ9UBK8 725 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TUBGCP4Q9UGJ1 667 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MRPS17Q9Y2R5 130 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 PIK3C2AO00443 1686 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CCL16O15467 120 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 KRT6AP02538 564 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 KRT6BP04259 564 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 AMD1P17707 334 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 KRT6CP48668 564 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TAF10Q12962 218 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MED21Q13503 144 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 AGBL2Q5U5Z8 902 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 EGFLAMQ63HQ2 1017 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 LRRC49Q8IUZ0 686 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CLEC4DQ8WXI8 215 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CMTM5Q96DZ9 223 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 TCF25Q9BQ70 676 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 C17orf80Q9BSJ5 609 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 NDEL1Q9GZM8 345 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 DNAJC18Q9H819 358 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 MANSC1Q9H8J5 431 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 DDX28Q9NUL7 540 aaKnown RBP7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 NCKIPSDQ9NZQ3 722 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 CFAP97Q9P2B7 532 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 IFT172Q9UG01 1749 aa7.02□□□□□ -1.29
SRGAP1-206ENST00000543397 ZNF839A8K0R7 811 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 TRDMT1O14717 391 aaKnown RBP7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 XPO1O14980 1071 aaKnown RBP7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 RAD51BO15315 384 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 B4GALT4O60513 344 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 CATP04040 527 aaKnown RBP7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 APODP05090 189 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 ARID3BQ8IVW6 561 aaPredicted RBP7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 STK40Q8N2I9 435 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 C12orf29Q8N999 325 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 MAGEC3Q8TD91 643 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 SHCBP1LQ9BZQ2 653 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 MIEF1Q9NQG6 463 aa7.01□□□□□ -1.29
SRGAP1-206ENST00000543397 COL20A1Q9P218 1284 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms