RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 MDH1BQ5I0G3 518 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 LIN9Q5TKA1 542 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC13A5Q86YT5 568 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CLVS1Q8IUQ0 354 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC38A6Q8IZM9 456 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 OR7G1Q8NGA0 311 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 STARD8Q92502 1023 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 KIF12Q96FN5 646 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 RBM18Q96H35 190 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 PRR11Q96HE9 360 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 NSL1Q96IY1 281 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 FAM124BQ9H5Z6 455 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 FBXO6Q9NRD1 293 aaPredicted RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 FARSBQ9NSD9 589 aaKnown RBP8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 PCYOX1Q9UHG3 505 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 NME7Q9Y5B8 376 aa8.18□□□□□ -1.1
PDLIM5-221ENST00000542407 CASP8AP2Q9UKL3 1982 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 C2orf71A6NGG8 1288 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 LILRB3O75022 631 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ZWINTO95229 277 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ASMTLO95671 621 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ANPEPP15144 967 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 RPA3P35244 121 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 GRIA2P42262 883 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ITGA8P53708 1063 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TAS2R40P59535 323 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 RBP5P82980 135 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TRIM32Q13049 653 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NFE2L1Q14494 772 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CYTH1Q15438 398 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 PTPN20Q4JDL3 420 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC45A4Q5BKX6 768 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 RBM44Q6ZP01 1051 aaKnown RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TRIM67Q6ZTA4 783 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 BTN2A1Q7KYR7 527 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 C12orf50Q8NA57 414 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 RFWD2Q8NHY2 731 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 FEZF2Q8TBJ5 459 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 INTS12Q96CB8 462 aaKnown RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CLPTM1LQ96KA5 538 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 C12orf10Q9HB07 376 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 PARVAQ9NVD7 372 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ARMCX1Q9P291 453 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TJP2Q9UDY2 1190 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 GRID1Q9ULK0 1009 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 GINS2Q9Y248 185 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TRIP11Q15643 1979 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NDC80O14777 642 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 FSCN2O14926 492 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CALB1P05937 261 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 PABPC4LP0CB38 370 aaKnown RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NAGAP17050 411 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 HSPA6P17066 643 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CRYBB1P53674 252 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 FCGRTP55899 365 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 PTPN11Q06124 597 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 BTKQ06187 659 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CDC16Q13042 620 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 MED21Q13503 144 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CYLC2Q14093 348 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 MYLK3Q32MK0 819 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 PLEKHG4Q58EX7 1191 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NDUFAF5Q5TEU4 345 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 IL23RQ5VWK5 629 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 LRRC8BQ6P9F7 803 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 ANKS1BQ7Z6G8 1248 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 JAZF1Q86VZ6 243 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 GATAD2AQ86YP4 633 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 HACE1Q8IYU2 909 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NATD1Q8N6N6 113 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TMEM35BQ8NCS4 154 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 WNT8BQ93098 351 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 C18orf25Q96B23 403 aaPredicted RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 HSPBAP1Q96EW2 488 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TMEM176AQ96HP8 235 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 CALN1Q9BXU9 219 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TRABDQ9H4I3 376 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TLE6Q9H808 572 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 MRPL47Q9HD33 250 aaKnown RBP8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 TAS2R1Q9NYW7 299 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 NINJ2Q9NZG7 142 aa8.17□□□□□ -1.1
PDLIM5-221ENST00000542407 EXOC1LA0A1B0GW35 172 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 OR5K4A6NMS3 321 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 TLR3O15455 904 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 YKT6O15498 198 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 PSTPIP1O43586 416 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 XPOTO43592 962 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CBFA2T3O75081 653 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ADAMTS4O75173 837 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 RECQL4O94761 1208 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 OR5F1O95221 314 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 GAS8O95995 478 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 TCF4P15884 667 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SPCS2Q15005 226 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC1A5Q15758 541 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 CTC1Q2NKJ3 1217 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 ZC3H12BQ5HYM0 836 aaKnown RBP8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C6orf132Q5T0Z8 1188 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 C6orf163Q5TEZ5 329 aa8.16□□□□□ -1.1
PDLIM5-221ENST00000542407 SLC51BQ86UW2 128 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms