RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 PPP2R5EQ16537 467 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CA9Q16790 459 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 ANKRD20A8PQ5CZ79 823 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 PITRM1Q5JRX3 1037 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 EOGTQ5NDL2 527 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 MBLAC2Q68D91 279 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CXorf57Q6NSI4 855 aaKnown RBP17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 TFAP2DQ7Z6R9 452 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 TSC1Q92574 1164 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 HES6Q96HZ4 224 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 CIPCQ9C0C6 399 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 IRF2BPLQ9H1B7 796 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 FBRSQ9HAH7 460 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 GPATCH2LQ9NWQ4 482 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 SUN2Q9UH99 717 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 JRKLQ9Y4A0 524 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 DOCK4Q8N1I0 1966 aa17.96■□□□□ 0.47
CLSTN3-210ENST00000540931 KIAA1549LQ6ZVL6 1849 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 SPTBN4Q9H254 2564 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 TCF4P15884 667 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 PTPN7P35236 360 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 GGCXP38435 758 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 NR2C2P49116 596 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 ECT2LQ008S8 904 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 RPS6KA1Q15418 735 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 DAB2IPQ5VWQ8 1189 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 SPEM1Q8N4L4 309 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF513Q8N8E2 541 aaPredicted RBP17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 LMLNQ96KR4 655 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 RNF157Q96PX1 679 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 BRD8Q9H0E9 1235 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 CHRDQ9H2X0 955 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF212Q9UDV6 495 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 TRIM10Q9UDY6 481 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 NEU3Q9UQ49 428 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 SNX10Q9Y5X0 201 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 MYOFQ9NZM1 2061 aa17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 RIF1Q5UIP0 2472 aaKnown RBP17.95■□□□□ 0.46
CLSTN3-210ENST00000540931 K7EQS6 105 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 EGFP01133 1207 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 TUBB4AP04350 444 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 TNNT1P13805 278 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 NTSR1P30989 418 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 CD70P32970 193 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF33AQ06730 810 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 IL31Q6EBC2 164 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 TXNRD3NBQ6F5E7 133 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 ADIPOR2Q86V24 386 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 CCDC50Q8IVM0 306 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 REXO1L1PQ8IX06 675 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 CCDC105Q8IYK2 499 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 ZNF687Q8N1G0 1237 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 NSMCE1Q8WV22 266 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 ATOH1Q92858 354 aaPredicted RBP17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 MYEOVQ96EZ4 313 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 CCDC114Q96M63 670 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 FERMT1Q9BQL6 677 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 ATP13A1Q9HD20 1204 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 THAP10Q9P2Z0 257 aaPredicted RBP17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 DNAI1Q9UI46 699 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 CAPN6Q9Y6Q1 641 aa17.94■□□□□ 0.46
CLSTN3-210ENST00000540931 SHISA7A6NL88 538 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 APOL1O14791 398 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 DCLK1O15075 740 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 TJP3O95049 919 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 PDGFBP01127 241 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CD72P21854 359 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 IL4RP24394 825 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CSKP41240 450 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 KIR2DL1P43626 348 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 PEX5P50542 639 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CCR3P51677 355 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 STARD3Q14849 445 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 PAFAH1B3Q15102 231 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 TAZQ16635 292 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 GEN1Q17RS7 908 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 ATP13A4Q4VNC1 1196 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 FSCBQ5H9T9 825 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 MEI1Q5TIA1 1274 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CIR1Q86X95 450 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 BBS5Q8N3I7 341 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 USP33Q8TEY7 942 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 RAPGEF5Q92565 580 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 ARHGEF2Q92974 986 aaKnown RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 ACE2Q9BYF1 805 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CARD9Q9H257 536 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 CLEC4EQ9ULY5 219 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 FARP1Q9Y4F1 1045 aaPredicted RBP17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 OR51B4Q9Y5P0 310 aa17.93■□□□□ 0.46
CLSTN3-210ENST00000540931 RASA4BC9J798 803 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 PRRT4C9JH25 899 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 PROB1E7EW31 1015 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 H0Y858 1186 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 RASA4O43374 803 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 KDELR3O43731 214 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 RNF40O75150 1001 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 TGM2P21980 687 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 CDKN2BP42772 138 aa17.92■□□□□ 0.46
CLSTN3-210ENST00000540931 SFSWAPQ12872 951 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms