RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 LRRK1Q38SD2 2015 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 FBXO43Q4G163 708 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 AFMIDQ63HM1 303 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 LINGO4Q6UY18 593 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 LEKR1Q6ZMV7 388 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 SYNPOQ8N3V7 929 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 PQLC3Q8N755 202 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 PCDH19Q8TAB3 1148 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 WFIKKN2Q8TEU8 576 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 TEKT4Q8WW24 435 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 NELL1Q92832 810 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 ARHGEF2Q92974 986 aaKnown RBP13.43□□□□□ -0.26
CHFR-216ENST00000538235 HMCESQ96FZ2 354 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 ZNF419Q96HQ0 510 aaPredicted RBP13.43□□□□□ -0.26
CHFR-216ENST00000538235 CELF6Q96J87 481 aaKnown RBP13.43□□□□□ -0.26
CHFR-216ENST00000538235 LRRC19Q9H756 370 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 VPS51Q9UID3 782 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 ALG6Q9Y672 507 aa13.43□□□□□ -0.26
CHFR-216ENST00000538235 THADAQ6YHU6 1953 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 MACROD2A1Z1Q3 448 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 TTC34A8MYJ7 566 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 H0Y858 1186 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ARHGAP6O43182 974 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 SMAD6O43541 496 aaKnown RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 MFSD11O43934 449 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ZNF821O75541 412 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 OR1E1P30953 314 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 METAP1P53582 386 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 COPAP53621 1224 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 GNA12Q03113 381 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ADCY2Q08462 1091 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ZNF177Q13360 481 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 EIF4HQ15056 248 aaKnown RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 CRY1Q16526 586 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 C11orf63Q6NUN7 778 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 LRRC31Q6UY01 552 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 MAMSTRQ6ZN01 415 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 SYT13Q7L8C5 426 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 FRMD1Q8N878 549 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 MDGA1Q8NFP4 955 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 FRS2Q8WU20 508 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 LRRN4Q8WUT4 740 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 FAF2Q96CS3 445 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 PHOX2BQ99453 314 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 ACE2Q9BYF1 805 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 FAM86C1Q9NVL1 165 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 KIAA1522Q9P206 1035 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 PACSIN2Q9UNF0 486 aaPredicted RBP13.42□□□□□ -0.26
CHFR-216ENST00000538235 ERVW-1Q9UQF0 538 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 PLXNA2O75051 1894 aa13.42□□□□□ -0.26
CHFR-216ENST00000538235 TYW5A2RUC4 315 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 NCAM2O15394 837 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 MAP3K6O95382 1288 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 DLDP09622 509 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 SP9P0CG40 484 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 SRCP12931 536 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 HOXB2P14652 356 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 GABRG2P18507 467 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 NTSR1P30989 418 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 SSR1P43307 286 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 MAGEA9P43362 315 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 NOP2P46087 812 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 MAPKAPK2P49137 400 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 FNTBP49356 437 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 CDH6P55285 790 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 MTA1Q13330 715 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 LLGL1Q15334 1064 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 DCAF12L1Q5VU92 463 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 NCBP2-AS2Q69YL0 99 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 AADACL2Q6P093 401 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 KIAA1328Q86T90 577 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 SETD3Q86TU7 594 aaPredicted RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 RASSF3Q86WH2 238 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 CACUL1Q86Y37 369 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 PSTKQ8IV42 348 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 CHPFQ8IZ52 775 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 DCAF4L2Q8NA75 395 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 ALG3Q92685 438 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 EPAS1Q99814 870 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 SLC39A8Q9C0K1 460 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 MKRN2Q9H000 416 aaKnown RBP13.41□□□□□ -0.26
CHFR-216ENST00000538235 PDFQ9HBH1 243 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 PYCARDQ9ULZ3 195 aa13.41□□□□□ -0.26
CHFR-216ENST00000538235 ILVBLA1L0T0 632 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 USP27XA6NNY8 438 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 RASA4BC9J798 803 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 RASA4O43374 803 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 TNNT1P13805 278 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 POLR2EP19388 210 aaKnown RBP13.4□□□□□ -0.26
CHFR-216ENST00000538235 NDUFV2P19404 249 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 CXCL12P48061 93 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 CSTF1Q05048 431 aaKnown RBP13.4□□□□□ -0.26
CHFR-216ENST00000538235 TAZQ16635 292 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 BOLA3Q53S33 107 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 HEATR6Q6AI08 1181 aaKnown RBP13.4□□□□□ -0.26
CHFR-216ENST00000538235 MFSD7Q6UXD7 560 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 NT5DC3Q86UY8 548 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 UMODL1-AS1Q8N2C9 162 aa13.4□□□□□ -0.26
CHFR-216ENST00000538235 CCDC112Q8NEF3 446 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms