RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ACTR5	Q9H9F9	607 aa	Predicted RBP	3.08	□□□□□ -1.92
CD44-238	ENST00000534296	SEPSECS	Q9HD40	501 aa	Known RBP	3.08	□□□□□ -1.92
CD44-238	ENST00000534296	TXNRD2	Q9NNW7	524 aa		3.08	□□□□□ -1.92
CD44-238	ENST00000534296	KRCC1	Q9NPI7	259 aa	Predicted RBP	3.08	□□□□□ -1.92
CD44-238	ENST00000534296	ARL15	Q9NXU5	204 aa		3.08	□□□□□ -1.92
CD44-238	ENST00000534296	WWOX	Q9NZC7	414 aa		3.08	□□□□□ -1.92
CD44-238	ENST00000534296	TBC1D14	Q9P2M4	693 aa		3.08	□□□□□ -1.92
CD44-238	ENST00000534296	MORC2	Q9Y6X9	1032 aa	Predicted RBP	3.08	□□□□□ -1.92
CD44-238	ENST00000534296		A0A0G2JK05	382 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	HMX3	A6NHT5	357 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	AGAP5	A6NIR3	686 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	ACKR2	O00590	384 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	NBN	O60934	754 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	IFNA2	P01563	188 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	ALPL	P05186	524 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	CCKAR	P32238	428 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	SERPINF1	P36955	418 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	GRK6	P43250	576 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	HTR6	P50406	440 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	LINC00205	P59089	165 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	GOLGA8F	Q08AF8	430 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	ADCK5	Q3MIX3	580 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	GXYLT1	Q4G148	440 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	FAM83B	Q5T0W9	1011 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	FAM171A1	Q5VUB5	890 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	OTUD1	Q5VV17	481 aa	Predicted RBP	3.07	□□□□□ -1.92
CD44-238	ENST00000534296	DGAT2L7P	Q6IED9	249 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	KIAA1161	Q6NSJ0	714 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	AAGAB	Q6PD74	315 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	CCDC174	Q6PII3	467 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	BHLHA9	Q7RTU4	235 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	MDGA2	Q7Z553	956 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	ARHGAP30	Q7Z6I6	1101 aa	Predicted RBP	3.07	□□□□□ -1.92
CD44-238	ENST00000534296	TMEM200A	Q86VY9	491 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	FBXL14	Q8N1E6	418 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	MYCT1	Q8N699	235 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	FSIP1	Q8NA03	581 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	ZNF333	Q96JL9	665 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	TRAPPC9	Q96Q05	1148 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	NPAS1	Q99742	590 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	NTPCR	Q9BSD7	190 aa	Known RBP	3.07	□□□□□ -1.92
CD44-238	ENST00000534296	TRIM31	Q9BZY9	425 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	PTPRH	Q9HD43	1115 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	PNRC2	Q9NPJ4	139 aa	Known RBP	3.07	□□□□□ -1.92
CD44-238	ENST00000534296	PRDM8	Q9NQV8	689 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	NCKIPSD	Q9NZQ3	722 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	DAPP1	Q9UN19	280 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	DTX4	Q9Y2E6	619 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296	PCDHA10	Q9Y5I2	948 aa		3.07	□□□□□ -1.92
CD44-238	ENST00000534296		A0A1W2PPC1	479 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A18P	A6NE21	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A16P	A6NEW6	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296		A6NNC1	897 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A9P	A6NNJ1	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A5P	A8MXJ8	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	CREB3	O43889	395 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	ATG13	O75143	517 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	NEURL1	O76050	574 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	WNT1	P04628	370 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	CYP1A2	P05177	515 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A15P	P0C7V4	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM90A14P	P0C7W9	464 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	PKM	P14618	531 aa	Known RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	CPA1	P15085	419 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	TNFRSF1B	P20333	461 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	PDIA3	P30101	505 aa	Known RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SKIV2L2	P42285	1042 aa	Known RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	HAL	P42357	657 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	THBS3	P49746	956 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM3B	P58499	235 aa	Predicted RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	ROR2	Q01974	943 aa	Known RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	GPR18	Q14330	331 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	TAF12	Q16514	161 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	C5orf22	Q49AR2	442 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	RUNDC3A	Q59EK9	446 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	ENTPD8	Q5MY95	495 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296		Q5PR19	223 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	TTC22	Q5TAA0	569 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SULT6B1	Q6IMI4	303 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SLC30A9	Q6PML9	568 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	ANKRD18A	Q8IVF6	992 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	C7orf57	Q8NEG2	295 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	BICD2	Q8TD16	824 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	CLEC4C	Q8WTT0	213 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	TRAPPC12	Q8WVT3	735 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	IGFBPL1	Q8WX77	278 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	GOLGA1	Q92805	767 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	KCNJ9	Q92806	393 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	FAM167B	Q9BTA0	163 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	HIPK2	Q9H2X6	1198 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	PABPC3	Q9H361	631 aa	Known RBP	3.06	□□□□□ -1.92
CD44-238	ENST00000534296	CATSPERB	Q9H7T0	1116 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SAYSD1	Q9NPB0	183 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SPAG4	Q9NPE6	437 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	PLK2	Q9NYY3	685 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	SELENON	Q9NZV5	590 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	PKP3	Q9Y446	797 aa		3.06	□□□□□ -1.92
CD44-238	ENST00000534296	KRTAP29-1	A8MX34	341 aa	Predicted RBP	3.05	□□□□□ -1.92
CD44-238	ENST00000534296	GRM8	O00222	908 aa		3.05	□□□□□ -1.92
CD44-238	ENST00000534296	TNFRSF13B	O14836	293 aa	Predicted RBP	3.05	□□□□□ -1.92

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