RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 FAM129BQ96TA1 746 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PACSIN1Q9BY11 444 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 RSPH9Q9H1X1 276 aaPredicted RBP13.32□□□□□ -0.28
VPS28-216ENST00000533806 NHEJ1Q9H9Q4 299 aaPredicted RBP13.32□□□□□ -0.28
VPS28-216ENST00000533806 FBRSQ9HAH7 460 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PRDM16Q9HAZ2 1276 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 CD93Q9NPY3 652 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 ZNHIT6Q9NWK9 470 aaKnown RBP13.32□□□□□ -0.28
VPS28-216ENST00000533806 VPS28Q9UK41 221 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 HS3ST2Q9Y278 367 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 EML5Q05BV3 1969 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 CXorf51AA0A1B0GTR3 108 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 TARSL2A2RTX5 802 aaKnown RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 WASH4PA8MWX3 477 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 MT-CO1P00395 513 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 RHOCP08134 193 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 TPM1P09493 284 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 TCF4P15884 667 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 IL1R2P27930 398 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 MIPP30301 263 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 MAPKAPK2P49137 400 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 NUMBP49757 651 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 ST8SIA6P61647 398 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 BYSLQ13895 437 aaKnown RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 CA9Q16790 459 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 EFHC2Q5JST6 749 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 SPDYCQ5MJ68 293 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 ERMARDQ5T6L9 678 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 PSTKQ8IV42 348 aaKnown RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 PGBD3Q8N328 593 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 DCAF4L2Q8NA75 395 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 OR7D4Q8NG98 312 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 SIPA1Q96FS4 1042 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 NCAPGQ9BPX3 1015 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 SNRNP25Q9BV90 132 aaKnown RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 ACE2Q9BYF1 805 aaPredicted RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 NOL6Q9H6R4 1146 aaKnown RBP13.31□□□□□ -0.28
VPS28-216ENST00000533806 PARD6AQ9NPB6 346 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 VPS51Q9UID3 782 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 RAB23Q9ULC3 237 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 LAMA1P25391 3075 aa13.31□□□□□ -0.28
VPS28-216ENST00000533806 CKAP5Q14008 2032 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 EDDM13A0A1B0GTR0 161 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 EIF3CLB5ME19 914 aaKnown RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 SNAP91O60641 907 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 LRP3O75074 770 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 SIN3BO75182 1162 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 RNF8O76064 485 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 RHOBTB1O94844 696 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 EPN2O95208 641 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 CD160O95971 181 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 VAV1P15498 845 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 FECHP22830 423 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 HTR7P34969 479 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 TPMTP51580 245 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 RPS14P62263 151 aaKnown RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 GNA12Q03113 381 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 ZBTB16Q05516 673 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 PIGHQ14442 188 aaPredicted RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 TSR1Q2NL82 804 aaKnown RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 PLA2G2CQ5R387 149 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 RWDD4Q6NW29 188 aaKnown RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 SH2D3CQ8N5H7 860 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 PRCCQ92733 491 aaPredicted RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 EIF3CQ99613 913 aaKnown RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 C2orf49Q9BVC5 232 aaPredicted RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 NUP85Q9BW27 656 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 MUC3BQ9H195 1237 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 WSB2Q9NYS7 404 aaPredicted RBP13.3□□□□□ -0.28
VPS28-216ENST00000533806 PCSK1NQ9UHG2 260 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 USP18Q9UMW8 372 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 AP4E1Q9UPM8 1137 aa13.3□□□□□ -0.28
VPS28-216ENST00000533806 BCLAF3A2AJT9 711 aaKnown RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 C10orf142B7Z368 130 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 K7ERQ8 282 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 ZBTB24O43167 697 aaPredicted RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 ZNF821O75541 412 aaPredicted RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 LCA5LO95447 670 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 TMEM253P0C7T8 217 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 SRCP12931 536 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 DESP17661 470 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 GLDCP23378 1020 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 EPHB2P29323 1055 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 HCAR3P49019 387 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 KRT83P78385 493 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 ELF2Q15723 593 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 DAB2IPQ5VWQ8 1189 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 KIAA1324Q6UXG2 1013 aaKnown RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 UMODL1-AS1Q8N2C9 162 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 RTL3Q8N8U3 475 aaKnown RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 ARHGEF2Q92974 986 aaKnown RBP13.29□□□□□ -0.28
VPS28-216ENST00000533806 BTBD6Q96KE9 485 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 SPACA7Q96KW9 195 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 CCDC42Q96M95 316 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 EPAS1Q99814 870 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 KLC2Q9H0B6 622 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 MAGEH1Q9H213 219 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 SPTLC3Q9NUV7 552 aa13.29□□□□□ -0.28
VPS28-216ENST00000533806 GPATCH2LQ9NWQ4 482 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms