RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TIAL1Q01085 375 aaKnown RBP eCLIP4.46□□□□□ -1.7
CD44-235ENST00000532339 LARS2Q15031 903 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 C1orf141Q5JVX7 400 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 ZNF530Q6P9A1 599 aaPredicted RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 SHC4Q6S5L8 630 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 APOBEC3FQ8IUX4 373 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 OR2C3Q8N628 320 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 C16orf52Q8NHV5 167 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 SMCR8Q8TEV9 937 aaPredicted RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 PHKBQ93100 1093 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 CTHRC1Q96CG8 243 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 NMD3Q96D46 503 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 COQ8BQ96D53 544 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 CCDC138Q96M89 665 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 LRRC27Q9C0I9 530 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 NYXQ9GZU5 481 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 DHX36Q9H2U1 1008 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 DBNDD1Q9H9R9 158 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 CPNE7Q9UBL6 633 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 MGAT4CQ9UBM8 478 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 LPAR3Q9UBY5 353 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 AFF4Q9UHB7 1163 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 TPCN1Q9ULQ1 816 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 MAFFQ9ULX9 164 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 AFG3L2Q9Y4W6 797 aa4.46□□□□□ -1.7
CD44-235ENST00000532339 DDX60LQ5H9U9 1706 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 GCN1Q92616 2671 aaKnown RBP4.46□□□□□ -1.7
CD44-235ENST00000532339 PRR23AA6NEV1 266 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 H7C4K7 107 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 KPNA5O15131 536 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 SPRY2O43597 315 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 RRP9O43818 475 aaKnown RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 ECE2O60344 883 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 TCEA3O75764 348 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 PIAS2O75928 621 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 BBOX1O75936 387 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 PTDSS1P48651 473 aaKnown RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 STK3Q13188 491 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 ARHGEF7Q14155 803 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 KRT72Q14CN4 511 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 CNGA2Q16280 664 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 ZNF260Q3ZCT1 412 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 VSTM1Q6UX27 236 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 KCTD20Q7Z5Y7 419 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 SKAP1Q86WV1 359 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 LINC01465Q8N7H1 131 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 DEPTORQ8TB45 409 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 PNISRQ8TF01 805 aaKnown RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 ATOH1Q92858 354 aaPredicted RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 OPTNQ96CV9 577 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 RMDN1Q96DB5 314 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 ZNF668Q96K58 619 aaPredicted RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 RIPOR3Q96MK2 946 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 HS6ST2Q96MM7 605 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 WACQ9BTA9 647 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 STK31Q9BXU1 1019 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 TEX13AQ9BXU3 409 aaPredicted RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 GAR1Q9NY12 217 aaKnown RBP4.45□□□□□ -1.7
CD44-235ENST00000532339 CORO2BQ9UQ03 480 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 ZFYVE26Q68DK2 2539 aa4.45□□□□□ -1.7
CD44-235ENST00000532339 COL1A1P02452 1464 aaPredicted RBP4.44□□□□□ -1.7
CD44-235ENST00000532339 MYMKA6NI61 221 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 RHPN2P1A8MT19 583 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 H3BNC9 293 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 TRIM38O00635 465 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 NTN1O95631 604 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 TMEM191BP0C7N4 346 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 CD19P15391 556 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 GATMP50440 423 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 PGDP52209 483 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 FOXG1P55316 489 aaPredicted RBP4.44□□□□□ -1.7
CD44-235ENST00000532339 CHAF1AQ13111 956 aaPredicted RBP4.44□□□□□ -1.7
CD44-235ENST00000532339 SLC39A6Q13433 755 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 FHL1Q13642 323 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 SLC29A2Q14542 456 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 C10orf25Q5T742 122 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 ANO7Q6IWH7 933 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 C1orf228Q6PIY5 440 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 DCDC5Q6ZRR9 648 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 DPP9Q86TI2 863 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 LIX1LQ8IVB5 337 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 MAP4K1Q92918 833 aa4.44□□□□□ -1.7
CD44-235ENST00000532339 ZBTB45Q96K62 511 aaPredicted RBP4.44□□□□□ -1.7
CD44-235ENST00000532339 BPTFQ12830 3046 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 CHD9Q3L8U1 2897 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 AQP7P3A6NL99 342 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 NCK2O43639 380 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 CETPP11597 493 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 HGFP14210 728 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 TSHRP16473 764 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 HOXB6P17509 224 aaKnown RBP4.43□□□□□ -1.7
CD44-235ENST00000532339 RPL17P18621 184 aaKnown RBP4.43□□□□□ -1.7
CD44-235ENST00000532339 TNFSF4P23510 183 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ACVR2AP27037 513 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 CPT1AP50416 773 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ITGA8P53708 1063 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 CFHR3Q02985 330 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ZNF543Q08ER8 600 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 KCNB1Q14721 858 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms