RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 POLR2EP19388 210 aaKnown RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 MZF1P28698 734 aaPredicted RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 ATICP31939 592 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 SLC8A1P32418 973 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 DRD3P35462 400 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 NUDT1P36639 197 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 CASRP41180 1078 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 KIF11P52732 1056 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 ZNF445P59923 1031 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 ST8SIA6P61647 398 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 CYP24A1Q07973 514 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 KCNMA1Q12791 1236 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 DRAP1Q14919 205 aaPredicted RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 PSMD6Q15008 389 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 SNRNP35Q16560 246 aaKnown RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 POM121L1PQ3SYA9 428 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 ZNF667Q5HYK9 610 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 CRTC1Q6UUV9 634 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 EFL1Q7Z2Z2 1120 aaKnown RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 PRPF39Q86UA1 669 aaKnown RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 VASH2Q86V25 355 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 TRIM69Q86WT6 500 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 FAM131CQ96AQ9 280 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 DNAJC19Q96DA6 116 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 LIN37Q96GY3 246 aaPredicted RBP8.53□□□□□ -1.04
CD44-232ENST00000531118 MRGPRX3Q96LB0 322 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 MYOCQ99972 504 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 ADNPQ9H2P0 1102 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 VRTNQ9H8Y1 702 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 LRRC4CQ9HCJ2 640 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 KLHL11Q9NVR0 708 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 MARCH2Q9P0N8 246 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 ACSL6Q9UKU0 697 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 KIF3AQ9Y496 699 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 PCDHGA7Q9Y5G6 932 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 LRBAP50851 2863 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 HIVEP3Q5T1R4 2406 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 TRPM6Q9BX84 2022 aa8.53□□□□□ -1.04
CD44-232ENST00000531118 TBC1D3DA0A087WVF3 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3IA0A087WXS9 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3EA0A087X179 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3KA0A087X1G2 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 EDDM13A0A1B0GTR0 161 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 FRMD3A2A2Y4 597 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3FA6NER0 549 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3LB9A6J9 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 PLRG1O43660 514 aaKnown RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 ATP9BO43861 1147 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 NEBLO76041 1014 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 ASLP04424 464 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3HP0C7X1 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 WT1P19544 449 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 C5AR1P21730 350 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 SLC5A2P31639 672 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 CSKP41240 450 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 HARS2P49590 506 aaKnown RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 NDST1P52848 882 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 METAP1P53582 386 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 ZNF177Q13360 481 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 STAT4Q14765 748 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TRIP4Q15650 581 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 CDKN3Q16667 212 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 BMT2Q1RMZ1 405 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 SETMARQ53H47 684 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 C9orf64Q5T6V5 341 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3GQ6DHY5 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3CQ6IPX1 549 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 ZCCHC8Q6NZY4 707 aaKnown RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 RSRC2Q7L4I2 434 aaKnown RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 C14orf80Q86SX3 495 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 JAMLQ86YT9 394 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TBC1D3Q8IZP1 549 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 C12orf29Q8N999 325 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 TMEM145Q8NBT3 493 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 ZNF548Q8NEK5 533 aaPredicted RBP8.52□□□□□ -1.05
CD44-232ENST00000531118 ELMO3Q96BJ8 720 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 CCDC127Q96BQ5 260 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 KLHDC7BQ96G42 594 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 DUSP23Q9BVJ7 150 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 STK17AQ9UEE5 414 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 STOML2Q9UJZ1 356 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 USP3Q9Y6I4 520 aa8.52□□□□□ -1.05
CD44-232ENST00000531118 CPED1A4D0V7 1026 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 TTC34A8MYJ7 566 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 PRAMEF26H0Y7S4 382 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 PLD2O14939 933 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 SCAMP1O15126 338 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 CASC3O15234 703 aaKnown RBP8.51□□□□□ -1.05
CD44-232ENST00000531118 SLC7A4O43246 635 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 LATS1O95835 1130 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 IDEP14735 1019 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 LONP1P36776 959 aaKnown RBP8.51□□□□□ -1.05
CD44-232ENST00000531118 NEK4P51957 841 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 CYP4F2P78329 520 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 BIRC3Q13489 604 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 MORC3Q14149 939 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 NCAPHQ15003 741 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 MANEAQ5SRI9 462 aa8.51□□□□□ -1.05
CD44-232ENST00000531118 PERM1Q5SV97 790 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms