RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	CTRB1	P17538	263 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	VCL	P18206	1134 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	GATA3	P23771	443 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	RRM1	P23921	792 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	TBXAS1	P24557	533 aa	Predicted RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SLC7A1	P30825	629 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SLC16A2	P36021	539 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	HSD17B2	P37059	387 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	FOLR3	P41439	243 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SLC11A2	P49281	568 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SNX16	P57768	344 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SEMA5A	Q13591	1074 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	RAB32	Q13637	225 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	E2F2	Q14209	437 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PTPRR	Q15256	657 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PKN2	Q16513	984 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CD300E	Q496F6	205 aa	Predicted RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	FBXO43	Q4G163	708 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	DAB2IP	Q5VWQ8	1189 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CTRB2	Q6GPI1	263 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	WDR93	Q6P2C0	686 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CORO6	Q6QEF8	472 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CYP26C1	Q6V0L0	522 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PPP1R21	Q6ZMI0	780 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CCDC149	Q6ZUS6	474 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PPP1R42	Q7Z4L9	355 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	LRRC8A	Q8IWT6	810 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	KRT78	Q8N1N4	520 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CELF5	Q8N6W0	485 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	XXYLT1	Q8NBI6	393 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	BEND2	Q8NDZ0	799 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ANGPTL6	Q8NI99	470 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CASP10	Q92851	521 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	NMD3	Q96D46	503 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ANKRD36BP1	Q96IX9	119 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CLMN	Q96JQ2	1002 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	MSLNL	Q96KJ4	702 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	P2RX7	Q99572	595 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SH3GL2	Q99962	352 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SLF1	Q9BQI6	1058 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	HAUS8	Q9BT25	410 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ISCA1	Q9BUE6	129 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	NUF2	Q9BZD4	464 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	UNK	Q9C0B0	810 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	DNAI2	Q9GZS0	605 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	TRPV6	Q9H1D0	765 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	NCOR1P1	Q9H4R4	102 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SMURF2	Q9HAU4	748 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ZCCHC17	Q9NP64	241 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ARMC1	Q9NVT9	282 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SLC39A1	Q9NY26	324 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	XPR1	Q9UBH6	696 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	RASAL2	Q9UJF2	1139 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ING1	Q9UK53	422 aa	Predicted RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	SHOC2	Q9UQ13	582 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CFL2	Q9Y281	166 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	ZBTB32	Q9Y2Y4	487 aa	Predicted RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	TMX2	Q9Y320	296 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	C2CD2	Q9Y426	696 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	LRRC42	Q9Y546	428 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PDS5A	Q29RF7	1337 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110	PLEKHG1	Q9ULL1	1385 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	FHOD3	Q2V2M9	1422 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	FMN1	Q68DA7	1419 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	TOP2A	P11388	1531 aa	Known RBP	5.87	□□□□□ -1.47
CD44-231	ENST00000531110		E9PCH4	1651 aa		5.87	□□□□□ -1.47
CD44-231	ENST00000531110	CDC42BPA	Q5VT25	1732 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	NSD2	O96028	1365 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110		A0A087X1B8	175 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	CENPBD1	B2RD01	187 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-231	ENST00000531110	BTN3A1	O00481	513 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	PSMD14	O00487	310 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	GUCY1B2	O75343	617 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	MYZAP	P0CAP1	466 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	UBTFL6	P0CB48	400 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-231	ENST00000531110	MYB	P10242	640 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	MYF5	P13349	255 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	PPP2R1A	P30153	589 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	RPL9	P32969	192 aa	Known RBP	5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SERPINB6	P35237	376 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	TRIM23	P36406	574 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	MPL	P40238	635 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	ASMT	P46597	345 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	COPA	P53621	1224 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	KRT83	P78385	493 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	KLC1	Q07866	573 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SIM2	Q14190	667 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SEMA3A	Q14563	771 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	ZNF268	Q14587	947 aa	Predicted RBP	5.86	□□□□□ -1.47
CD44-231	ENST00000531110	MYLK3	Q32MK0	819 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	CAVIN4	Q5BKX8	364 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	WDR45B	Q5MNZ6	344 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SLC10A5	Q5PT55	438 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SNX30	Q5VWJ9	437 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	KIAA1614	Q5VZ46	1190 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SIGIRR	Q6IA17	410 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	SLC2A7	Q6PXP3	512 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	C6orf89	Q6UWU4	347 aa		5.86	□□□□□ -1.47
CD44-231	ENST00000531110	RANBP10	Q6VN20	620 aa		5.86	□□□□□ -1.47

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