RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GOLGA4Q13439 2230 aaKnown RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 SYNJ2BP-COX16A0A087WUM0 186 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 FAM149AA5PLN7 773 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 TRABD2BA6NFA1 517 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 TLR4O00206 839 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 PLRG1O43660 514 aaKnown RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 PON1P27169 355 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 EPHA8P29322 1005 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 USP8P40818 1118 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 ARRB1P49407 418 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 NUMBP49757 651 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 IRAK1P51617 712 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 NXPH1P58417 271 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 AUHQ13825 339 aaKnown RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 COL9A2Q14055 689 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 ARHGAP44Q17R89 818 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 EXOC3L4Q17RC7 722 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 C5orf22Q49AR2 442 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 SLC45A4Q5BKX6 768 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 NAPEPLDQ6IQ20 393 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 C19orf48Q6RUI8 117 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 DHRS13Q6UX07 377 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 GBP6Q6ZN66 633 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 C11orf57Q6ZUT1 292 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 FAM183BPQ6ZVS7 135 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 SLC26A9Q7LBE3 791 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 DSG4Q86SJ6 1040 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 TMPRSS12Q86WS5 348 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 IRF2BP1Q8IU81 584 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 PASD1Q8IV76 773 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 PDCD7Q8N8D1 485 aaKnown RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 C1orf131Q8NDD1 294 aaKnown RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 OR52K2Q8NGK3 314 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 OR8D1Q8WZ84 308 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 RNF34Q969K3 372 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 RPRD1AQ96P16 312 aaPredicted RBP11.68□□□□□ -0.54
VPS28-214ENST00000531032 NOX5Q96PH1 765 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 FEM1AQ9BSK4 669 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 ERVMER34-1Q9H9K5 563 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 SCUBE2Q9NQ36 999 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 COX16Q9P0S2 106 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 KIAA1468Q9P260 1216 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 ARHGAP20Q9P2F6 1191 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 SARDHQ9UL12 918 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 HS3ST4Q9Y661 456 aa11.68□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3DA0A087WVF3 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3IA0A087WXS9 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3EA0A087X179 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3KA0A087X1G2 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3FA6NER0 549 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3LB9A6J9 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 E9PAM4 449 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 CBX4O00257 560 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 PLK4O00444 970 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ENC1O14682 589 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ALOX15BO15296 676 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 RTN2O75298 545 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 CLDN11O75508 207 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 DAB1O75553 588 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 GRAP2O75791 330 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ERBB2P04626 1255 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ITGAVP06756 1048 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 C1SP09871 688 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3HP0C7X1 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 CDK4P11802 303 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 NUDT1P36639 197 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 RXRGP48443 463 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 PTK2Q05397 1052 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 CYP4F3Q08477 520 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 NME3Q13232 169 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ZNF177Q13360 481 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 COL28A1Q2UY09 1125 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 PTPN20Q4JDL3 420 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 CCDC157Q569K6 752 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 AGBL4Q5VU57 503 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 OTUD1Q5VV17 481 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 FAM46CQ5VWP2 391 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3GQ6DHY5 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3CQ6IPX1 549 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 PDZD3Q86UT5 571 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 IQCHQ86VS3 1027 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TRIM69Q86WT6 500 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D3Q8IZP1 549 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 OXR1Q8N573 874 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 MFSD2AQ8NA29 543 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 ZNF397Q8NF99 534 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 CNDP2Q96KP4 475 aaKnown RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 SIX2Q9NPC8 291 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 SLC25A13Q9UJS0 675 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 AJAP1Q9UKB5 411 aaPredicted RBP11.67□□□□□ -0.54
VPS28-214ENST00000531032 VANGL2Q9ULK5 521 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 PPM1HQ9ULR3 514 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 TBC1D30Q9Y2I9 924 aa11.67□□□□□ -0.54
VPS28-214ENST00000531032 IGSF10Q6WRI0 2623 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 C1QTNF3-AMACRE9PGA6 284 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 MCF2LO15068 1137 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 PAGE1O75459 146 aa11.66□□□□□ -0.54
VPS28-214ENST00000531032 RFPL3O75679 317 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms