RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TCF3P15923 654 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 TFE3P19532 575 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 IL1R2P27930 398 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 L1CAMP32004 1257 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 HTR7P34969 479 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 CCR2P41597 374 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 MTHFRP42898 656 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 SSR1P43307 286 aaKnown RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 GRIA4P48058 902 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 HARS2P49590 506 aaKnown RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 TAS2R40P59535 323 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 PITX1P78337 314 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 NRG1Q02297 640 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 SLC25A11Q02978 314 aaKnown RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 SCAPQ12770 1279 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 EFEMP1Q12805 493 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 CBX2Q14781 532 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 ATP13A4Q4VNC1 1196 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 NUGGCQ68CJ6 796 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 TXNDC8Q6A555 127 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 HTR3DQ70Z44 454 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 DDX42Q86XP3 938 aaKnown RBP eCLIP7.65□□□□□ -1.18
CD44-228ENST00000528455 WFDC8Q8IUA0 241 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 DMRTC2Q8IXT2 367 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 CMTM8Q8IZV2 173 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 ARL14EPQ8N8R7 260 aaPredicted RBP7.65□□□□□ -1.18
CD44-228ENST00000528455 MAB21L3Q8N8X9 362 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 ATP6V0D2Q8N8Y2 350 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 KCTD6Q8NC69 237 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 SHKBP1Q8TBC3 707 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 RNF34Q969K3 372 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 RPGRIP1Q96KN7 1286 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 BTN2A3PQ96KV6 586 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 RIPOR3Q96MK2 946 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 NECTIN4Q96NY8 510 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 LRFN3Q9BTN0 628 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 APOL5Q9BWW9 433 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 NACA2Q9H009 215 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 TKTL2Q9H0I9 626 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 CARD9Q9H257 536 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 GOLPH3Q9H4A6 298 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 FAM204AQ9H8W3 233 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 PIGVQ9NUD9 493 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 TDP1Q9NUW8 608 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 PCSK1NQ9UHG2 260 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 STOML2Q9UJZ1 356 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 NUDT5Q9UKK9 219 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 FZD10Q9ULW2 581 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 SNX12Q9UMY4 172 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 ZNF510Q9Y2H8 683 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 HYOU1Q9Y4L1 999 aa7.65□□□□□ -1.18
CD44-228ENST00000528455 C2orf16Q68DN1 1984 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 E2F8A0AVK6 867 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 PRR33A8MZF0 331 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ENC1O14682 589 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 STC2O76061 302 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 LATS1O95835 1130 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ATP1A1P05023 1023 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 MBL2P11226 248 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 KDELR1P24390 212 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 AVPR1AP37288 418 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 SLC11A2P49281 568 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ARSEP51690 589 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 TEAD2Q15562 447 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 DPYSL2Q16555 572 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 TAZQ16635 292 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 SPRED3Q2MJR0 410 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 RAB6CQ53S08 254 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ODF2Q5BJF6 829 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ZC3H12AQ5D1E8 599 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 TFDP3Q5H9I0 405 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 RARS2Q5T160 578 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 GPR158Q5T848 1215 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 OTUD1Q5VV17 481 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 CYP4V2Q6ZWL3 525 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 TAC4Q86UU9 113 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 CELF5Q8N6W0 485 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 E2F7Q96AV8 911 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 TCEAL4Q96EI5 215 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 RBM41Q96IZ5 413 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 FCRL2Q96LA5 508 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 OSBPL9Q96SU4 736 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 DDX50Q9BQ39 737 aaKnown RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 RAB6CQ9H0N0 254 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 TRPV4Q9HBA0 871 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 GKN1Q9NS71 199 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 DONSONQ9NYP3 566 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 RCOR3Q9P2K3 495 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 OR12D3Q9UGF7 316 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 MUTYHQ9UIF7 546 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 RASAL2Q9UJF2 1139 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 TTC7AQ9ULT0 858 aaPredicted RBP7.64□□□□□ -1.19
CD44-228ENST00000528455 SOX13Q9UN79 622 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 ARHGAP26Q9UNA1 814 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 NR2E1Q9Y466 385 aa7.64□□□□□ -1.19
CD44-228ENST00000528455 A0A096LPE4 126 aa7.63□□□□□ -1.19
CD44-228ENST00000528455 A0A1W2PPZ6 126 aa7.63□□□□□ -1.19
CD44-228ENST00000528455 FAM86C2PA6NEL3 165 aa7.63□□□□□ -1.19
CD44-228ENST00000528455 DRGXA6NNA5 263 aa7.63□□□□□ -1.19
CD44-228ENST00000528455 KCNK3O14649 394 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms