RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 HES3Q5TGS1 186 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 KLHL10Q6JEL2 608 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 TRIM59Q8IWR1 403 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 ATP6V0D2Q8N8Y2 350 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 ZNF606Q8WXB4 792 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 INTS2Q9H0H0 1204 aaKnown RBP24.29■■□□□ 1.48
CPSF1-202ENST00000527827 THAP9Q9H5L6 903 aa24.29■■□□□ 1.48
CPSF1-202ENST00000527827 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.29■■□□□ 1.48
CPSF1-202ENST00000527827 GOLGA6L4A6NEF3 574 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 PPP1R3GB7ZBB8 358 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 PLRG1O43660 514 aaKnown RBP24.28■■□□□ 1.48
CPSF1-202ENST00000527827 LETM1O95202 739 aaPredicted RBP24.28■■□□□ 1.48
CPSF1-202ENST00000527827 BMP6P22004 513 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 ITPKBP27987 946 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 FOXR2Q6PJQ5 311 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 PRPF39Q86UA1 669 aaKnown RBP24.28■■□□□ 1.48
CPSF1-202ENST00000527827 OXR1Q8N573 874 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 PIP4K2CQ8TBX8 421 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 ALG14Q96F25 216 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 MED15Q96RN5 788 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 KDM4CQ9H3R0 1056 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 ACP6Q9NPH0 428 aa24.28■■□□□ 1.48
CPSF1-202ENST00000527827 HOOK1Q9UJC3 728 aaKnown RBP24.28■■□□□ 1.48
CPSF1-202ENST00000527827 A0A1B0GVM2 712 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 TCAF2A6NFQ2 919 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 SLC7A4O43246 635 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 MAT2AP31153 395 aaKnown RBP24.27■■□□□ 1.48
CPSF1-202ENST00000527827 EIF2S3P41091 472 aaKnown RBP24.27■■□□□ 1.48
CPSF1-202ENST00000527827 PPP1R2P41236 205 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 VASPP50552 380 aaPredicted RBP24.27■■□□□ 1.48
CPSF1-202ENST00000527827 OR52K2Q8NGK3 314 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 NELFBQ8WX92 580 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 PTPRQQ9UMZ3 2332 aa24.27■■□□□ 1.48
CPSF1-202ENST00000527827 MED7O43513 233 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 ATP9BO43861 1147 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 IRAK1P51617 712 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 SEMG2Q02383 582 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 RTP5Q14D33 572 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 RABGAP1LQ5R372 815 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 TTC39BQ5VTQ0 682 aaPredicted RBP24.26■■□□□ 1.47
CPSF1-202ENST00000527827 AGBL4Q5VU57 503 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 FBXL22Q6P050 247 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 IQCHQ86VS3 1027 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 TRIM69Q86WT6 500 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 OR8D1Q8WZ84 308 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 NRSN2Q9GZP1 204 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 UBE2TQ9NPD8 197 aaPredicted RBP24.26■■□□□ 1.47
CPSF1-202ENST00000527827 SLC12A6Q9UHW9 1150 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 PPM1HQ9ULR3 514 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 DMTF1Q9Y222 760 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 AK5Q9Y6K8 562 aa24.26■■□□□ 1.47
CPSF1-202ENST00000527827 EIF4E1BA6NMX2 242 aaKnown RBP24.25■■□□□ 1.47
CPSF1-202ENST00000527827 THAP12O43422 761 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 AFPP02771 609 aaKnown RBP24.25■■□□□ 1.47
CPSF1-202ENST00000527827 CKMT2P17540 419 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 NUDT1P36639 197 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 MARSP56192 900 aaKnown RBP24.25■■□□□ 1.47
CPSF1-202ENST00000527827 CENPCQ03188 943 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 CNTN1Q12860 1018 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 PDCLQ13371 301 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 ILKQ13418 452 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 DSG4Q86SJ6 1040 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 ELOA2Q8IYF1 753 aaPredicted RBP24.25■■□□□ 1.47
CPSF1-202ENST00000527827 DEFB106AQ8N104 65 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 SLC2A13Q96QE2 648 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 FEM1AQ9BSK4 669 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 FAM204AQ9H8W3 233 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 CTNND2Q9UQB3 1225 aa24.25■■□□□ 1.47
CPSF1-202ENST00000527827 SLC2A3P11169 496 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 GNA15P30679 374 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 OXCT1P55809 520 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 CDK17Q00537 523 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 OVGP1Q12889 678 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 PROX2Q3B8N5 592 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 POM121L1PQ3SYA9 428 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 ACCSLQ4AC99 568 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 FAM46CQ5VWP2 391 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 WDTC1Q8N5D0 677 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 UBL7Q96S82 380 aaPredicted RBP24.24■■□□□ 1.47
CPSF1-202ENST00000527827 PRORYQ9H606 182 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 DDIT4Q9NX09 232 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 SLC25A13Q9UJS0 675 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 CA5BQ9Y2D0 317 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.24■■□□□ 1.47
CPSF1-202ENST00000527827 OR51B4Q9Y5P0 310 aa24.24■■□□□ 1.47
CPSF1-202ENST00000527827 SYNJ2BP-COX16A0A087WUM0 186 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 BICDL2A1A5D9 508 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 MCF2LO15068 1137 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 ALOX15BO15296 676 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 MAGEC1O60732 1142 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 SDC3O75056 442 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 CCR1P32246 355 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 STX17P56962 302 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 TAS2R38P59533 333 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 AUHQ13825 339 aaKnown RBP24.23■■□□□ 1.47
CPSF1-202ENST00000527827 MORC3Q14149 939 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 STAT4Q14765 748 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 DLG2Q15700 870 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 Q6ZVU0 165 aa24.23■■□□□ 1.47
CPSF1-202ENST00000527827 RFFLQ8WZ73 363 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms