RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 PRTGQ2VWP7 1150 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 GXYLT1Q4G148 440 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 ALG10Q5BKT4 473 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 ALG10BQ5I7T1 473 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 B4GALNT4Q76KP1 1039 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 RASGRP2Q7LDG7 609 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 FSIP1Q8NA03 581 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 HDHD5Q9BXW7 423 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 FRMD8Q9BZ67 464 aaPredicted RBP5.15□□□□□ -1.59
CD44-223ENST00000526553 TWSG1Q9GZX9 223 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 SLC25A13Q9UJS0 675 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 ANAPC4Q9UJX5 808 aa5.15□□□□□ -1.59
CD44-223ENST00000526553 GAGE12JA6NER3 117 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 CD8B2A6NJW9 211 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 E7EVH7 732 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 MDM4O15151 490 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 SEPT4O43236 478 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 KCNAB3O43448 404 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 POLD2P49005 469 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 FOXG1P55316 489 aaPredicted RBP5.14□□□□□ -1.59
CD44-223ENST00000526553 LINC00205P59089 165 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 MAPK7Q13164 816 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 PDCLQ13371 301 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 PLK5Q496M5 336 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 MTFR2Q6P444 385 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 SYT13Q7L8C5 426 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 IGFN1Q86VF2 1251 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 SCN4BQ8IWT1 228 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 RUBCNQ92622 972 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 LPAR1Q92633 364 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 ARPC5LQ9BPX5 153 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 TRIM31Q9BZY9 425 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 TMEM248Q9NWD8 314 aa5.14□□□□□ -1.59
CD44-223ENST00000526553 TMEM247A6NEH6 219 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 INSIG1O15503 277 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 CREB3O43889 395 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 HLA-DQA2P01906 255 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 CRYABP02511 175 aaKnown RBP5.13□□□□□ -1.59
CD44-223ENST00000526553 KLKB1P03952 638 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 ADD2P35612 726 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 SLC16A2P36021 539 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 KRTAP1-1Q07627 177 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 PTGR1Q14914 329 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 POSTNQ15063 836 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 ZRSR2Q15696 482 aaKnown RBP5.13□□□□□ -1.59
CD44-223ENST00000526553 GRAMD1BQ3KR37 738 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 ENTPD8Q5MY95 495 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 DAB2IPQ5VWQ8 1189 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 NUGGCQ68CJ6 796 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 SYNE3Q6ZMZ3 975 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 C9orf47Q6ZRZ4 202 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 GALNT7Q86SF2 657 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 FAM185AQ8N0U4 392 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 SLC25A41Q8N5S1 370 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 TMEM174Q8WUU8 243 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 GOLGA1Q92805 767 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 KTI12Q96EK9 354 aaPredicted RBP5.13□□□□□ -1.59
CD44-223ENST00000526553 FRG2BQ96QU4 278 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.13□□□□□ -1.59
CD44-223ENST00000526553 CLPBQ9H078 707 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 MYLK2Q9H1R3 596 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 MAP6D1Q9H9H5 199 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 ZNF304Q9HCX3 659 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 PTPRHQ9HD43 1115 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 Q9N2J8 555 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 PNRC2Q9NPJ4 139 aaKnown RBP5.13□□□□□ -1.59
CD44-223ENST00000526553 KIF17Q9P2E2 1029 aa5.13□□□□□ -1.59
CD44-223ENST00000526553 TRBV5-7A0A0A0MS05 114 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.12□□□□□ -1.59
CD44-223ENST00000526553 TCRBV7S3A2A0A539 114 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 SPTLC2O15270 562 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 CCNT1O60563 726 aaKnown RBP5.12□□□□□ -1.59
CD44-223ENST00000526553 TK1P04183 234 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 ACP5P13686 325 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 GSTM2P28161 218 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 TYK2P29597 1187 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 PNPLA4P41247 253 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 RBM5P52756 815 aaKnown RBP eCLIP5.12□□□□□ -1.59
CD44-223ENST00000526553 C5orf22Q49AR2 442 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 FAM171A1Q5VUB5 890 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 HMBOX1Q6NT76 420 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 AAGABQ6PD74 315 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 CCDC25Q86WR0 208 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 TMEM199Q8N511 208 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 NKAPQ8N5F7 415 aaKnown RBP5.12□□□□□ -1.59
CD44-223ENST00000526553 TMEM217Q8N7C4 229 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 SPPL3Q8TCT6 385 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 KCNJ9Q92806 393 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 ZNF419Q96HQ0 510 aaPredicted RBP5.12□□□□□ -1.59
CD44-223ENST00000526553 WACQ9BTA9 647 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 EBF3Q9H4W6 596 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 ACTR5Q9H9F9 607 aaPredicted RBP5.12□□□□□ -1.59
CD44-223ENST00000526553 PLEKHA2Q9HB19 425 aa5.12□□□□□ -1.59
CD44-223ENST00000526553 KRT38O76015 456 aa5.11□□□□□ -1.59
CD44-223ENST00000526553 LYL1P12980 280 aa5.11□□□□□ -1.59
CD44-223ENST00000526553 CYP4B1P13584 511 aa5.11□□□□□ -1.59
CD44-223ENST00000526553 HOXB2P14652 356 aa5.11□□□□□ -1.59
CD44-223ENST00000526553 AARSP49588 968 aaKnown RBP eCLIP5.11□□□□□ -1.59
CD44-223ENST00000526553 RASSF2P50749 326 aa5.11□□□□□ -1.59
CD44-223ENST00000526553 CYP2J2P51589 502 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms