RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CD68P34810 354 aaPredicted RBP21.68■■□□□ 1.06
VPS28-205ENST00000526204 CXCR3P49682 368 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 KLC1Q07866 573 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 ITGA9Q13797 1035 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 PRPSAP1Q14558 356 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 CAPRIN2Q6IMN6 1127 aaKnown RBP21.68■■□□□ 1.06
VPS28-205ENST00000526204 GPRIN1Q7Z2K8 1008 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 SMARCD1Q96GM5 515 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 OR12D3Q9UGF7 316 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 CLEC11AQ9Y240 323 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 A6NHS1 94 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 PSMD3O43242 534 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MAP3K7O43318 606 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 COPAP53621 1224 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 AP2B1P63010 937 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 ZNF33AQ06730 810 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MPP3Q13368 585 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 SMAD1Q15797 465 aaKnown RBP21.68■■□□□ 1.06
VPS28-205ENST00000526204 HSP90AA5PQ58FG0 334 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 C1orf146Q5VVC0 180 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 SPRYD7Q5W111 196 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MAVSQ7Z434 540 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MYLK4Q86YV6 388 aaPredicted RBP21.68■■□□□ 1.06
VPS28-205ENST00000526204 IRGQQ8WZA9 623 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 CMTM5Q96DZ9 223 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 TEKT5Q96M29 485 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 PANX3Q96QZ0 392 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 AGAP2Q99490 1192 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MLPHQ9BV36 600 aaPredicted RBP21.68■■□□□ 1.06
VPS28-205ENST00000526204 NSMCE4AQ9NXX6 385 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MID2Q9UJV3 735 aa21.68■■□□□ 1.06
VPS28-205ENST00000526204 MYO18AQ92614 2054 aaKnown RBP21.67■■□□□ 1.06
VPS28-205ENST00000526204 A0A096LPK6 155 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 TMEM114B3SHH9 223 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 M0QZ92 97 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 ZNF195O14628 629 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 PCSK1P29120 753 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 NAPEPLDQ6IQ20 393 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 IRGCQ6NXR0 463 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 CLEC14AQ86T13 490 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 KCNMB4Q86W47 210 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 GSTCDQ8NEC7 633 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 ARHGAP42A6NI28 874 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 HHLA1C9JL84 531 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 APOA4P06727 396 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 NFKB1P19838 968 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 IGFBP6P24592 240 aaPredicted RBP21.67■■□□□ 1.06
VPS28-205ENST00000526204 COG7P83436 770 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 ZBTB17Q13105 803 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 CERCAMQ5T4B2 595 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 DCLRE1AQ6PJP8 1040 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 LINC00523Q86TU6 105 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 URGCPQ8TCY9 931 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 MFSD3Q96ES6 412 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 TKTL2Q9H0I9 626 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 C20orf96Q9NUD7 363 aaPredicted RBP21.67■■□□□ 1.06
VPS28-205ENST00000526204 ZNF358Q9NW07 568 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 FLRT1Q9NZU1 646 aa21.67■■□□□ 1.06
VPS28-205ENST00000526204 ATP9BO43861 1147 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 FKBP6O75344 327 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 AMHP03971 560 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 ARRB2P32121 409 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 CLCNKBP51801 687 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 BEX3Q00994 111 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 CDH17Q12864 832 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 FSCBQ5H9T9 825 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 PDPK2PQ6A1A2 396 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 PM20D1Q6GTS8 502 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 FAM136AQ96C01 138 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 ATXN7L3BQ96GX2 97 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 CLPTM1LQ96KA5 538 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 CSNK1G1Q9HCP0 422 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 FAM105AQ9NUU6 356 aa21.66■■□□□ 1.06
VPS28-205ENST00000526204 A0A088AWK7 358 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 HSPA4LO95757 839 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 RPL9P32969 192 aaKnown RBP21.65■■□□□ 1.06
VPS28-205ENST00000526204 TMCO4Q5TGY1 634 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 ATG14Q6ZNE5 492 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 BHLHA9Q7RTU4 235 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 TNS4Q8IZW8 715 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 PLD6Q8N2A8 252 aaKnown RBP21.65■■□□□ 1.06
VPS28-205ENST00000526204 SPDL1Q96EA4 605 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 GAD1Q99259 594 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 MCMBPQ9BTE3 642 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 TRIM62Q9BVG3 475 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 NMRAL1Q9HBL8 299 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 CHST12Q9NRB3 414 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 CHRAC1Q9NRG0 131 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 TMEM30AQ9NV96 361 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 TIMM13Q9Y5L4 95 aaPredicted RBP21.65■■□□□ 1.06
VPS28-205ENST00000526204 G3V2L1 256 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 TRIM13O60858 407 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 LRIG2O94898 1065 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 C2P06681 752 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 ANPEPP15144 967 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 RABGGTBP53611 331 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 CACNA2D1P54289 1103 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 MRPS6P82932 125 aaKnown RBP21.65■■□□□ 1.06
VPS28-205ENST00000526204 CFAP157Q5JU67 520 aa21.65■■□□□ 1.06
VPS28-205ENST00000526204 METTL21CQ5VZV1 264 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms