RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 GAS6Q14393 721 aa21.28■■□□□ 1
CD44-222ENST00000526025 PARP15Q460N3 678 aa21.28■■□□□ 1
CD44-222ENST00000526025 Q6ZS52 159 aa21.28■■□□□ 1
CD44-222ENST00000526025 NT5DC3Q86UY8 548 aa21.28■■□□□ 1
CD44-222ENST00000526025 IL17RCQ8NAC3 791 aa21.28■■□□□ 1
CD44-222ENST00000526025 RPLP0P6Q8NHW5 317 aa21.28■■□□□ 1
CD44-222ENST00000526025 C2orf49Q9BVC5 232 aaPredicted RBP21.28■■□□□ 1
CD44-222ENST00000526025 CIPCQ9C0C6 399 aa21.28■■□□□ 1
CD44-222ENST00000526025 MUC3BQ9H195 1237 aa21.28■■□□□ 1
CD44-222ENST00000526025 NDFIP2Q9NV92 336 aa21.28■■□□□ 1
CD44-222ENST00000526025 VPS28Q9UK41 221 aa21.28■■□□□ 1
CD44-222ENST00000526025 MMP17Q9ULZ9 603 aa21.28■■□□□ 1
CD44-222ENST00000526025 PCDHA3Q9Y5H8 950 aa21.28■■□□□ 1
CD44-222ENST00000526025 CAPN6Q9Y6Q1 641 aa21.28■■□□□ 1
CD44-222ENST00000526025 MIF4GDA9UHW6 222 aaKnown RBP21.27■■□□□ 1
CD44-222ENST00000526025 DCLK1O15075 740 aa21.27■■□□□ 1
CD44-222ENST00000526025 CD48P09326 243 aa21.27■■□□□ 1
CD44-222ENST00000526025 TAZQ16635 292 aa21.27■■□□□ 1
CD44-222ENST00000526025 PTPRNQ16849 979 aa21.27■■□□□ 1
CD44-222ENST00000526025 EOGTQ5NDL2 527 aa21.27■■□□□ 1
CD44-222ENST00000526025 AFMIDQ63HM1 303 aa21.27■■□□□ 1
CD44-222ENST00000526025 EGFLAMQ63HQ2 1017 aa21.27■■□□□ 1
CD44-222ENST00000526025 SYT13Q7L8C5 426 aa21.27■■□□□ 1
CD44-222ENST00000526025 APCDD1Q8J025 514 aa21.27■■□□□ 1
CD44-222ENST00000526025 RAPGEF5Q92565 580 aa21.27■■□□□ 1
CD44-222ENST00000526025 GABRG3Q99928 467 aa21.27■■□□□ 1
CD44-222ENST00000526025 LRFN3Q9BTN0 628 aa21.27■■□□□ 1
CD44-222ENST00000526025 CALN1Q9BXU9 219 aa21.27■■□□□ 1
CD44-222ENST00000526025 ACE2Q9BYF1 805 aaPredicted RBP21.27■■□□□ 1
CD44-222ENST00000526025 KLC2Q9H0B6 622 aa21.27■■□□□ 1
CD44-222ENST00000526025 NOL6Q9H6R4 1146 aaKnown RBP21.27■■□□□ 1
CD44-222ENST00000526025 LRRC19Q9H756 370 aa21.27■■□□□ 1
CD44-222ENST00000526025 DNAI1Q9UI46 699 aa21.27■■□□□ 1
CD44-222ENST00000526025 AMFRQ9UKV5 643 aa21.27■■□□□ 1
CD44-222ENST00000526025 PLA2G4CQ9UP65 541 aa21.27■■□□□ 1
CD44-222ENST00000526025 NYNRINQ9P2P1 1898 aaKnown RBP21.26■□□□□ 0.99
CD44-222ENST00000526025 A0A0D9SEW6 157 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 LRRD1A4D1F6 860 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 C3orf70A6NLC5 250 aaPredicted RBP21.26■□□□□ 0.99
CD44-222ENST00000526025 KRT1P04264 644 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 NTSR1P30989 418 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 SERPINB6P35237 376 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 TIE1P35590 1138 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 CCR3P51677 355 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 SEC13P55735 322 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 ECT2LQ008S8 904 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 MTAPQ13126 283 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 POLD3Q15054 466 aaPredicted RBP21.26■□□□□ 0.99
CD44-222ENST00000526025 C2orf27AQ580R0 203 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 ANKRD20A8PQ5CZ79 823 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 ZFYVE27Q5T4F4 411 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 TMCO3Q6UWJ1 677 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 PEX26Q7Z412 305 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 DTWD2Q8NBA8 298 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 EXD1Q8NHP7 514 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 ARHGEF2Q92974 986 aaKnown RBP21.26■□□□□ 0.99
CD44-222ENST00000526025 ALS2CR12Q96Q35 445 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 PSMB7Q99436 277 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 LZTFL1Q9NQ48 299 aa21.26■□□□□ 0.99
CD44-222ENST00000526025 KLF8O95600 359 aaPredicted RBP21.25■□□□□ 0.99
CD44-222ENST00000526025 SLC20A2Q08357 652 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 ZNF234Q14588 700 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 ODF2Q5BJF6 829 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 EMC10Q5UCC4 262 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 SDE2Q6IQ49 451 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 RCOR2Q8IZ40 523 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 CHPFQ8IZ52 775 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 ALLCQ8N6M5 410 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 TRIM58Q8NG06 486 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 OR7D4Q8NG98 312 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 RBM41Q96IZ5 413 aaKnown RBP21.25■□□□□ 0.99
CD44-222ENST00000526025 MRGPRX3Q96LB0 322 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 ATP13A1Q9HD20 1204 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 KLHL11Q9NVR0 708 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 ERVW-1Q9UQF0 538 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 HS3ST2Q9Y278 367 aa21.25■□□□□ 0.99
CD44-222ENST00000526025 GOLGA6L9A6NEM1 432 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 ZSCAN5CA6NGD5 496 aaPredicted RBP21.24■□□□□ 0.99
CD44-222ENST00000526025 ZMPSTE24O75844 475 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 ZRANB2O95218 330 aaKnown RBP eCLIP21.24■□□□□ 0.99
CD44-222ENST00000526025 AMPD1P23109 780 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 PEX5P50542 639 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 GEMIN4P57678 1058 aaKnown RBP21.24■□□□□ 0.99
CD44-222ENST00000526025 COPS2P61201 443 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 ST8SIA6P61647 398 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 PAFAH1B3Q15102 231 aaKnown RBP21.24■□□□□ 0.99
CD44-222ENST00000526025 RETSATQ6NUM9 610 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 PKN3Q6P5Z2 889 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 REXO1L1PQ8IX06 675 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 UBL4BQ8N7F7 174 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 TXNDC5Q8NBS9 432 aaKnown RBP21.24■□□□□ 0.99
CD44-222ENST00000526025 PCDH19Q8TAB3 1148 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 SORCS1Q8WY21 1168 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 KRT35Q92764 455 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 MYO19Q96H55 970 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 HES6Q96HZ4 224 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 RNF157Q96PX1 679 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 TMEM245Q9H330 911 aa21.24■□□□□ 0.99
CD44-222ENST00000526025 PRMT8Q9NR22 394 aaPredicted RBP21.24■□□□□ 0.99
CD44-222ENST00000526025 VPS51Q9UID3 782 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms