RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 DCAF17Q5H9S7 520 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ZNF362Q5T0B9 420 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 UBXN11Q5T124 520 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TRNP1Q6NT89 227 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 IZUMO2Q6UXV1 221 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 FAM47EQ6ZV65 393 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 PRPF39Q86UA1 669 aaKnown RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 SCUBE1Q8IWY4 988 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 SYCP3Q8IZU3 236 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 VWCEQ96DN2 955 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ACAP3Q96P50 834 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 UIMC1Q96RL1 719 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CDCA3Q99618 268 aaPredicted RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ZBED2Q9BTP6 218 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 COLEC11Q9BWP8 271 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 MRPS26Q9BYN8 205 aaKnown RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 VCXQ9H320 206 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TRPV5Q9NQA5 729 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TLR9Q9NR96 1032 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 DUS2Q9NX74 493 aaKnown RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 GALNT8Q9NY28 637 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 IPO11Q9UI26 975 aaKnown RBP7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CYTH4Q9UIA0 394 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ZNF639Q9UID6 485 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 DMTF1Q9Y222 760 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ITM2BQ9Y287 266 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 PCDHB12Q9Y5F1 795 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CITO14578 2027 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 FAM237BA0A1B0GVD1 139 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TCRBV9S1A1TA0A576 114 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TLL1O43897 1013 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 BANF1O75531 89 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 IL1R2P27930 398 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CHN2P52757 468 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 RAB15P59190 212 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CDKL1Q00532 357 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 MESDQ14696 234 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 PSMD6Q15008 389 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 NOMO2Q5JPE7 1267 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 RHOT1Q8IXI2 618 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TTC39CQ8N584 583 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 C17orf50Q8WW18 174 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 BRINP2Q9C0B6 783 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 SLC52A3Q9NQ40 469 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 OLAHQ9NV23 265 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 CLIC5Q9NZA1 410 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 ACAD8Q9UKU7 415 aa7.59□□□□□ -1.19
CLIP1-205ENST00000514271 TMEM150BA6NC51 233 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 HNRNPDLO14979 420 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 HAUS5O94927 633 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PDGFRBP09619 1106 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PNPLA4P41247 253 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PTK2BQ14289 1009 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PCLAFQ15004 111 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 SPATA24Q86W54 205 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PELI3Q8N2H9 469 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 GPD1LQ8N335 351 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 FBXO22Q8NEZ5 403 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MGARPQ8TDB4 240 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TAS1R2Q8TE23 839 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TMEM40Q8WWA1 233 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 LINC01599Q8WXQ3 324 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 POMGNT1Q8WZA1 660 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 JADE3Q92613 823 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TRIM11Q96F44 468 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 DACH2Q96NX9 599 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 FAM193BQ96PV7 902 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 YME1L1Q96TA2 773 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MIS12Q9H081 205 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 RPF1Q9H9Y2 349 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 GPRC5CQ9NQ84 441 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 DPP7Q9UHL4 492 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 CDH22Q9UJ99 828 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 UBQLN1Q9UMX0 589 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 IPPQ9Y573 584 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 CXorf49A8MYA2 514 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 NDC80O14777 642 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 STAU1O95793 577 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 BPGMP07738 259 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 LIMK1P53667 647 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 GK3PQ14409 553 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TIGD5Q53EQ6 642 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 ZNF697Q5TEC3 545 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MFSD7Q6UXD7 560 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 BRSK2Q8IWQ3 736 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PPIL6Q8IXY8 311 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 PIP4K2CQ8TBX8 421 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MPP4Q96JB8 637 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 CLPTM1LQ96KA5 538 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 ZNF558Q96NG5 402 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 DDX50Q9BQ39 737 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 IQCGQ9H095 443 aaKnown RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 CDT1Q9H211 546 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 SH3PXD2BA1X283 911 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 TRIM24O15164 1050 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 CHADO15335 359 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 WISP3O95389 354 aaPredicted RBP7.58□□□□□ -1.2
CLIP1-205ENST00000514271 BMP10O95393 424 aa7.58□□□□□ -1.2
CLIP1-205ENST00000514271 MYL4P12829 197 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms