RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 RAD54BQ9Y620 910 aa10.06□□□□□ -0.8
TOPBP1-209ENST00000513818 WASH3PC4AMC7 463 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 SGK1O00141 431 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 PSTPIP1O43586 416 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KRT86O43790 486 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 MFSD11O43934 449 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 RAMP2O60895 175 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KRT7P08729 469 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 HLA-EP13747 358 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 HNRNPLP14866 589 aaKnown RBP eCLIP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 POLR2EP19388 210 aaKnown RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 COL9A1P20849 921 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 IL4RP24394 825 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 IL12RB1P42701 662 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 SLC1A1P43005 524 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KIR2DL1P43626 348 aaPredicted RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 DYNLT1P63172 113 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 SATB1Q01826 763 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 MTAPQ13126 283 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 ZNF234Q14588 700 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 PTPRNQ16849 979 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 FAM182AQ5T1J6 154 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 C6orf118Q5T5N4 469 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 IL31Q6EBC2 164 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 MFSD7Q6UXD7 560 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 LINGO4Q6UY18 593 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KIAA0907Q7Z7F0 614 aaPredicted RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 NT5DC3Q86UY8 548 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 ZNF354CQ86Y25 554 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 CACUL1Q86Y37 369 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 PSTKQ8IV42 348 aaKnown RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 REXO1L1PQ8IX06 675 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 CHPFQ8IZ52 775 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 TXLNBQ8N3L3 684 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 IL17RCQ8NAC3 791 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 TXNDC5Q8NBS9 432 aaKnown RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KIAA1524Q8TCG1 905 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 WFIKKN2Q8TEU8 576 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 USP33Q8TEY7 942 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 LRRN4Q8WUT4 740 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 EXOC4Q96A65 974 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 RPL10LQ96L21 214 aaKnown RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 LRFN3Q9BTN0 628 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 KLC2Q9H0B6 622 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 CHRDQ9H2X0 955 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 CATSPERBQ9H7T0 1116 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 ATP13A1Q9HD20 1204 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 TMEM51Q9NW97 253 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 SPATA6Q9NWH7 488 aaPredicted RBP10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 ELOVL2Q9NXB9 296 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 VPS51Q9UID3 782 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 TBC1D30Q9Y2I9 924 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 OR51B4Q9Y5P0 310 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 ZDBF2Q9HCK1 2354 aa10.05□□□□□ -0.8
TOPBP1-209ENST00000513818 C3orf70A6NLC5 250 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 PRR33A8MZF0 331 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 RASA4BC9J798 803 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 DFFAO00273 331 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 DCLK1O15075 740 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 FGF10O15520 208 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 RASA4O43374 803 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ADAM23O75077 832 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 KRT10P13645 584 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 VAV1P15498 845 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 KDELR1P24390 212 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 CTNNA1P35221 906 aaKnown RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 TNFRSF4P43489 277 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 MAPKAPK2P49137 400 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 CLCN5P51795 746 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 GNA12Q03113 381 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ZNF211Q13398 564 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 IFI16Q16666 785 aaKnown RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 FNDC3BQ53EP0 1204 aaKnown RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ACBD5Q5T8D3 534 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 KAZNQ674X7 775 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 NCBP2-AS2Q69YL0 99 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 TSSK4Q6SA08 328 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 TMCO3Q6UWJ1 677 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ARHGAP36Q6ZRI8 547 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 PEX26Q7Z412 305 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 BMP8AQ7Z5Y6 402 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 SETD3Q86TU7 594 aaPredicted RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 CCDC50Q8IVM0 306 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ARHGAP12Q8IWW6 846 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 PQLC3Q8N755 202 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 PCDH19Q8TAB3 1148 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 FAM71BQ8TC56 605 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ALG3Q92685 438 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ARHGEF2Q92974 986 aaKnown RBP10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 CLDN23Q96B33 292 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 MYO19Q96H55 970 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 MRGPRX3Q96LB0 322 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 HHIPQ96QV1 700 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 NELL2Q99435 816 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 ZNF670Q9BS34 389 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 HERPUD2Q9BSE4 406 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 FEM1AQ9BSK4 669 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 SLC39A8Q9C0K1 460 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 AMFRQ9UKV5 643 aa10.04□□□□□ -0.8
TOPBP1-209ENST00000513818 BOLA1Q9Y3E2 137 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms