RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TMEM8AQ9HCN3 771 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CYP4F12Q9HCS2 524 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 WHRNQ9P202 907 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 FADS3Q9Y5Q0 445 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 RGPD1P0DJD0 1748 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PLOD2O00469 737 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 INPP4BO15327 924 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 KATNA1O75449 491 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 UNC5CO95185 931 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ITIH1P19827 911 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SP100P23497 879 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TKTP29401 623 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 STIP1P31948 543 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF543Q08ER8 600 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PDK1Q15118 436 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM83EQ2M2I3 478 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ACAD10Q6JQN1 1059 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 AFTPHQ6ULP2 937 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 HHIPL2Q6UWX4 724 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 EEF1AKMT1Q8WVE0 214 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TAMM41Q96BW9 452 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 FRMD6Q96NE9 622 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CHST12Q9NRB3 414 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 NUDT5Q9UKK9 219 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 HPSEQ9Y251 543 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SETD1AO15047 1707 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 GPR182O15218 404 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 DGAT1O75907 488 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ASMTLO95671 621 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CCNE2O96020 404 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 THEGLP0DJG4 465 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 THRBP10828 461 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ARHGDIBP52566 201 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 EFNA5P52803 228 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 RPL19P84098 196 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ALDH6A1Q02252 535 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PON2Q15165 354 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 VN1R5Q7Z5H4 357 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SLCO6A1Q86UG4 719 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 AP3S1Q92572 193 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 S100A13Q99584 98 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 APOL5Q9BWW9 433 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SLITRK2Q9H156 845 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TOR3AQ9H497 397 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC28A3Q9HAS3 691 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 MTMR4Q9NYA4 1195 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC30A1Q9Y6M5 507 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 XRN1Q8IZH2 1706 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 RGSL1A5PLK6 1076 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ZBTB11O95625 1053 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF682O95780 498 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 IFI30P13284 250 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 NCALDP61601 193 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CBFBQ13951 182 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 STARD3Q14849 445 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ATP6AP1LQ52LC2 224 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 DCAF6Q58WW2 860 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PAGE2BQ5JRK9 111 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 CASP12Q6UXS9 341 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 PAGE2Q7Z2X7 111 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ZNF571Q7Z3V5 609 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 ELOA2Q8IYF1 753 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 NSUN4Q96CB9 384 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TMEM168Q9H0V1 697 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 SLC6A15Q9H2J7 730 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TOR4AQ9NXH8 423 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 TJP2Q9UDY2 1190 aa8.87□□□□□ -0.99
LIMCH1-218ENST00000513024 C17orf102A2RUQ5 167 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 TM9SF1O15321 606 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 KDM4BO94953 1096 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 IFNA14P01570 189 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 PGK2P07205 417 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 CHRM3P20309 590 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 PPP3CCP48454 512 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 SEPHS1P49903 392 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 MAPK12P53778 367 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 ZCCHC8Q6NZY4 707 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 NET1Q7Z628 596 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 OOSP2Q86WS3 158 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 HIPK1Q86Z02 1210 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 PDPRQ8NCN5 879 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 TBC1D16Q8TBP0 767 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 GAL3ST3Q96A11 431 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 PFDN5Q99471 154 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 KCTD14Q9BQ13 255 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 SPATA16Q9BXB7 569 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 JPH1Q9HDC5 661 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 MAPRE3Q9UPY8 281 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 FAM220BPB1ANY3 271 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 CLDN25C9JDP6 229 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 H3BMM5 538 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 H3BNX3 289 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 RIPK2O43353 540 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 SNAP91O60641 907 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 PMPCBO75439 489 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 EGFRP00533 1210 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 MAGP20916 626 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 GPD1P21695 349 aa8.86□□□□□ -0.99
LIMCH1-218ENST00000513024 RPA1P27694 616 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms