RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 BTKQ06187 659 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 MPP3Q13368 585 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 GK3PQ14409 553 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 LSM12Q3MHD2 195 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 CCDC153Q494R4 210 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ARL13AQ5H913 290 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 SPATA31D4Q6ZUB0 917 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 ARPINQ7Z6K5 226 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 SGF29Q96ES7 293 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 VCX3AQ9NNX9 186 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 SNX10Q9Y5X0 201 aa9.45□□□□□ -0.9
LIMCH1-215ENST00000512632 EEF2KO00418 725 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 GRM5P41594 1212 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SERPINB8P50452 374 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 CHN2P52757 468 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ARHGAP1Q07960 439 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 CNGA3Q16281 694 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PDCD2Q16342 344 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 STRADAQ7RTN6 431 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 DSELQ8IZU8 1212 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 BEST2Q8NFU1 509 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 LRGUKQ96M69 825 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ACE2Q9BYF1 805 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 LCTP09848 1927 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SIP14410 1827 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 H3BRB1 525 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 FZD9O00144 591 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ALOX15P16050 662 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 RPS6KA3P51812 740 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 MS4A2Q01362 244 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 FLOT2Q14254 428 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC25A52Q3SY17 297 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SPANXN3Q5MJ09 141 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 NOL9Q5SY16 702 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ARHGAP17Q68EM7 881 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PAOXQ6QHF9 649 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 TMC7Q7Z402 723 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 CCNYL1Q8N7R7 359 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PIP4K2CQ8TBX8 421 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 USP33Q8TEY7 942 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 DCUN1D1Q96GG9 259 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 CNBD2Q96M20 576 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 APBA2Q99767 749 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 EPAS1Q99814 870 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 OMDQ99983 421 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 UBE2OQ9C0C9 1292 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 TUT1Q9H6E5 874 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 KPNA7A9QM74 516 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ADM5C9JUS6 153 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 RECQL4O94761 1208 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 THRAP10827 490 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 TFEBP19484 476 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 BAG6P46379 1132 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 GRIA4P48058 902 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 GRM3Q14832 879 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 C9orf57Q5W0N0 161 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PTAR1Q7Z6K3 402 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SPATA24Q86W54 205 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PSTKQ8IV42 348 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 KYQ8NBH2 561 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 RNF169Q8NCN4 708 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 NAT14Q8WUY8 206 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 KBTBD7Q8WVZ9 684 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 VPS39Q96JC1 886 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 RTKNQ9BST9 563 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 LRRC4Q9HBW1 653 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PIGVQ9NUD9 493 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SETD4Q9NVD3 440 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 TLK1Q9UKI8 766 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ZCWPW2A0A1B0GU75 182 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF487B1APH4 448 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 STAU1O95793 577 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PTPN3P26045 913 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ADCYAP1R1P41586 468 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 LAMB3Q13751 1172 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF460Q14592 562 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 FBXO47Q5MNV8 452 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 UGT2A3Q6UWM9 527 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 SLC7A14Q8TBB6 771 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 TMA16Q96EY4 203 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 OSMRQ99650 979 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ANLNQ9NQW6 1124 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 UBAP1Q9NZ09 502 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 ZDHHC2Q9UIJ5 367 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PSMD13Q9UNM6 376 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 PARP14Q460N5 1801 aa9.44□□□□□ -0.9
LIMCH1-215ENST00000512632 RGSL1A5PLK6 1076 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 TRPA1O75762 1119 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 PABPC4LP0CB38 370 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 CYP2C8P10632 490 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 GLDCP23378 1020 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 IGFBP6P24592 240 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 HOXA11P31270 313 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 POU5F1BQ06416 359 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 USP10Q14694 798 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 MAP3K21Q5TCX8 1036 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 ZNF772Q68DY9 489 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 ARMCX2Q7L311 632 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 KCNMB4Q86W47 210 aa9.43□□□□□ -0.9
LIMCH1-215ENST00000512632 KCTD4Q8WVF5 259 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms