RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 CATSPERBQ9H7T0 1116 aa17.12■□□□□ 0.33
SNCA-209ENST00000506244 OR51B4Q9Y5P0 310 aa17.12■□□□□ 0.33
SNCA-209ENST00000506244 VPS13AQ96RL7 3174 aa17.12■□□□□ 0.33
SNCA-209ENST00000506244 ZFHX2Q9C0A1 2572 aaPredicted RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 TARSL2A2RTX5 802 aaKnown RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 MYO1FO00160 1098 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 MAP3K13O43283 966 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 CREB3O43889 395 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 LRP3O75074 770 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 LRCH4O75427 683 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 TMEM253P0C7T8 217 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 EPHB2P29323 1055 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 CTSOP43234 321 aaPredicted RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 CLCN6P51797 869 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 COPAP53621 1224 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 TPI1P60174 286 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 SFSWAPQ12872 951 aaKnown RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 MAP7D1Q3KQU3 841 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 TTC31Q49AM3 519 aaPredicted RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 SPDYCQ5MJ68 293 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 ERMARDQ5T6L9 678 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 PMS2CLQ68D20 193 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 LPCAT2Q7L5N7 544 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 NLRP14Q86W24 1093 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 GPR161Q8N6U8 529 aaKnown RBP17.11■□□□□ 0.33
SNCA-209ENST00000506244 ZNF366Q8N895 744 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 OR52K2Q8NGK3 314 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 ERLEC1Q96DZ1 483 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 CCDC114Q96M63 670 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 TRIM7Q9C029 511 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 PRSS16Q9NQE7 514 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 CTTNBP2NLQ9P2B4 639 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 ZNF212Q9UDV6 495 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 USP18Q9UMW8 372 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 NEU3Q9UQ49 428 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 PCDHGA5Q9Y5G8 931 aa17.11■□□□□ 0.33
SNCA-209ENST00000506244 OTOGLQ3ZCN5 2332 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 CXorf51AA0A1B0GTR3 108 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 FAM72CH0Y354 149 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 DCLK1O15075 740 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 RAMP2O60895 175 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 EPN2O95208 641 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 MIPP30301 263 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 OXTRP30559 389 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 STK19P49842 368 aaPredicted RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 GEMIN4P57678 1058 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 GNA12Q03113 381 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 SEMA3BQ13214 749 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 ELAVL3Q14576 367 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 FAM72AQ5TYM5 149 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 FAM72DQ6L9T8 149 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 RETSATQ6NUM9 610 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 FAM72BQ86X60 149 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 RTL3Q8N8U3 475 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 TC2NQ8N9U0 490 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 RLN3Q8WXF3 142 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 ARHGEF26Q96DR7 871 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 RPL10LQ96L21 214 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 CHP1Q99653 195 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 SNRNP25Q9BV90 132 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 DUSP15Q9H1R2 295 aaPredicted RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 MAGEH1Q9H213 219 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 DHX35Q9H5Z1 703 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 ATP13A1Q9HD20 1204 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 LUC7LQ9NQ29 371 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 USP36Q9P275 1121 aaKnown RBP17.1■□□□□ 0.33
SNCA-209ENST00000506244 PCSK1NQ9UHG2 260 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 VPS51Q9UID3 782 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 SCML1Q9UN30 329 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 CYP8B1Q9UNU6 501 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 HS3ST2Q9Y278 367 aa17.1■□□□□ 0.33
SNCA-209ENST00000506244 FAM186AA6NE01 2351 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 TTC34A8MYJ7 566 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 GOLGA6L6A8MZA4 724 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 ATP9BO43861 1147 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 FOXD2O60548 495 aaPredicted RBP17.09■□□□□ 0.33
SNCA-209ENST00000506244 SIN3BO75182 1162 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 DNTTP04053 509 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 C7P10643 843 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 DPP6P42658 865 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 ARTNQ5T4W7 220 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 DSG4Q86SJ6 1040 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 CACUL1Q86Y37 369 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 PYROXD2Q8N2H3 581 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 SH2D3CQ8N5H7 860 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 PANX2Q96RD6 677 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 PEBP4Q96S96 227 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 PSMB7Q99436 277 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 SLC6A17Q9H1V8 727 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 RSPH9Q9H1X1 276 aaPredicted RBP17.09■□□□□ 0.33
SNCA-209ENST00000506244 SPTLC3Q9NUV7 552 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 SLCO3A1Q9UIG8 710 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 INTUQ9ULD6 942 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 HPCAL4Q9UM19 191 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 INVSQ9Y283 1065 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 NYNRINQ9P2P1 1898 aaKnown RBP17.09■□□□□ 0.33
SNCA-209ENST00000506244 GPR179Q6PRD1 2367 aa17.09■□□□□ 0.33
SNCA-209ENST00000506244 RIF1Q5UIP0 2472 aaKnown RBP17.08■□□□□ 0.33
SNCA-209ENST00000506244 IGHV1OR15-9A0A0B4J2B8 117 aa17.08■□□□□ 0.32
SNCA-209ENST00000506244 A0A0D9SEW6 157 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms