RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CD48P09326 243 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SERPINH1P50454 418 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 POLD3Q15054 466 aaPredicted RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SLC1A5Q15758 541 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SWT1Q5T5J6 900 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 ANKRD22Q5VYY1 191 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 PRMT9Q6P2P2 845 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CPNE8Q86YQ8 564 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 CXorf38Q8TB03 319 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 P2RY11Q96G91 374 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 SNX27Q96L92 541 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 APOL5Q9BWW9 433 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 EIF3LQ9Y262 564 aaKnown RBP10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 STYXL1Q9Y6J8 313 aa10.97□□□□□ -0.65
LIMCH1-205ENST00000503057 DCXO43602 365 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 GCATO75600 419 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 C22orf31O95567 290 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 ALDH2P05091 517 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 CCNB1P14635 433 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 ERCC2P18074 760 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 OR1E1P30953 314 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 IRGCQ6NXR0 463 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 FAM35AQ86V20 835 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 SNX31Q8N9S9 440 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 SEPT8Q92599 483 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 CD101Q93033 1021 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 CCT7Q99832 543 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 B3GNT5Q9BYG0 378 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 PIAS1O75925 651 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 DDX5P17844 614 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 CDCA2Q69YH5 1023 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 ECHDC2Q86YB7 292 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 CLEC4FQ8N1N0 589 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 POU5F2Q8N7G0 328 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 SPDYE1Q8NFV5 336 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 DDX1Q92499 740 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 FAM162AQ96A26 154 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 MCRS1Q96EZ8 462 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 WWOXQ9NZC7 414 aa10.96□□□□□ -0.65
LIMCH1-205ENST00000503057 SMIM28A0A1B0GU29 152 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 TBC1D4O60343 1298 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 BPGMP07738 259 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 KLRC2P26717 231 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 SP2Q02086 613 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 PLOD1Q02809 727 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 AGKQ53H12 422 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 PMF1Q6P1K2 205 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 GDPD5Q8WTR4 605 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 FOPNLQ96NB1 174 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 SLC4A7Q9Y6M7 1214 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 ENO4A6NNW6 628 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 CFAP99D6REC4 459 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 GOLGA8TH3BQL2 631 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 PRAMEF19Q5SWL8 479 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 PCDHGB4Q9UN71 923 aa10.96□□□□□ -0.66
LIMCH1-205ENST00000503057 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 H0YGN5 161 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NR5A2O00482 541 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 CLDN5O00501 218 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 MGEA5O60502 916 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 VPS4BO75351 444 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 PIGNO95427 931 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 KRT33BQ14525 404 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 TCHHL1Q5QJ38 904 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 C7orf26Q96N11 449 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF184Q99676 751 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 ADAM2Q99965 735 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 OSBPL7Q9BZF2 842 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 SNX15Q9NRS6 342 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 BLOC1S6Q9UL45 172 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NFS1Q9Y697 457 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 PROCP04070 461 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 PSMC3P17980 439 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 CDH2P19022 906 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 FASTKQ14296 549 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 INSCQ1MX18 579 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 CACHD1Q5VU97 1274 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 SNX32Q86XE0 403 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 MYO1HQ8N1T3 1032 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 CCDC90BQ9GZT6 254 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 COL22A1Q8NFW1 1626 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 FZD9O00144 591 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 MBL2P11226 248 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 RAG1P15918 1043 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NEPROQ6NW34 567 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 C16orf87Q6PH81 154 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 RFWD2Q8NHY2 731 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 SLC35B2Q8TB61 432 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 LRRN4Q8WUT4 740 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 PHF21BQ96EK2 531 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 RMDN2Q96LZ7 410 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 POLR1EQ9GZS1 481 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF112Q9UJU3 913 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 SCN7AQ01118 1682 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NCF1BA6NI72 391 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 ZBBXA8MT70 800 aa10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NCF1CA8MVU1 366 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 PHGDHO43175 533 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-205ENST00000503057 NCF1P14598 390 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms