RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SCHIP1Q9P0W5 487 aaPredicted RBP16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 MOSPD1Q9UJG1 213 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 SORCS3Q9UPU3 1222 aa16.61■□□□□ 0.25
CCDC88B-209ENST00000494080 BCL10O95999 233 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 CHRM3P20309 590 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 NFKBIAP25963 317 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ANKRD52Q8NB46 1076 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 C7orf43Q8WVR3 580 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 GPR63Q9BZJ6 419 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 NDEL1Q9GZM8 345 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 RBPJLQ9UBG7 517 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 DRG1Q9Y295 367 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 MT-CO1P00395 513 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ALDH2P05091 517 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF23P17027 643 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 PSMA4P25789 261 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 NOS2P35228 1153 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 TUBP50607 506 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 CDC16Q13042 620 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ZRANB3Q5FWF4 1079 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 C10orf82Q8WW14 230 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 PREBQ9HCU5 417 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 PRKAG3Q9UGI9 489 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 DYTNA2CJ06 578 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 CYBBP04839 570 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 MSX2P35548 267 aaPredicted RBP16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 GRM5P41594 1212 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 SLC11A2P49281 568 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF280DQ6N043 979 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 OLFML1Q6UWY5 402 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 MON1BQ7L1V2 547 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 MAN1C1Q9NR34 630 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ETNK2Q9NVF9 386 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 RUVBL2Q9Y230 463 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 F5H5T6 163 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 FZD9O00144 591 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 TIMM44O43615 452 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 SERPINA6P08185 405 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 DNAJB2P25686 324 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 SLC39A12Q504Y0 691 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 SPDYAQ5MJ70 313 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF555Q8NEP9 628 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 MRPS26Q9BYN8 205 aaKnown RBP16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ELOVL4Q9GZR5 314 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 PLGRKTQ9HBL7 147 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 ST3GAL5Q9UNP4 418 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 PLA2G4CQ9UP65 541 aa16.6■□□□□ 0.25
CCDC88B-209ENST00000494080 SUPT7LO94864 414 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 NR2C2P49116 596 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 FAM83EQ2M2I3 478 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 DRAXINQ8NBI3 349 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF516Q92618 1163 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 HSFY1Q96LI6 401 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ZFP42Q96MM3 310 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 RSL24D1Q9UHA3 163 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 A0A087WXM4 84 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 MAGEC1O60732 1142 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ATP5BP06576 529 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 GOT1P17174 413 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 DMPKQ09013 629 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 TRAF2Q12933 501 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ZNF177Q13360 481 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 APBB2Q92870 758 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 LGMNQ99538 433 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 CINPQ9BW66 212 aaPredicted RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 BRD8Q9H0E9 1235 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 AVILO75366 819 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 CNTFP26441 200 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 PEX2P28328 305 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 NEK3P51956 506 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 CSE1LP55060 971 aaKnown RBP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 ITGADQ13349 1161 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 AGKQ53H12 422 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 OR12D3Q9UGF7 316 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 SH3GLB1Q9Y371 365 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 COQ4Q9Y3A0 265 aa16.59■□□□□ 0.25
CCDC88B-209ENST00000494080 TRPC5OSA6NMA1 111 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 SUPT3HB4E1H0 165 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 NCAM2O15394 837 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 STX7O15400 261 aaKnown RBP16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 CLOCKO15516 846 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 MAP3K13O43283 966 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 PQBP1O60828 265 aaKnown RBP16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 LRCH4O75427 683 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 RHOBTB1O94844 696 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 ECHS1P30084 290 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 MICU2Q8IYU8 434 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 PRDM12Q9H4Q4 367 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 SH3BP1Q9Y3L3 701 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 TCRBV9S1A1TA0A576 114 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 TREHO43280 583 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 TBC1D4O60343 1298 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 MMP3P08254 477 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 CDH18Q13634 790 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 KRT72Q14CN4 511 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 CCDC80Q76M96 950 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 PTAR1Q7Z6K3 402 aaPredicted RBP16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 HPS6Q86YV9 775 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms