RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 PLK5Q496M5 336 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 OTUD1Q5VV17 481 aaPredicted RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3GQ6DHY5 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3CQ6IPX1 549 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 Q6ZSV7 163 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 USP43Q70EL4 1123 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 ZNF367Q7RTV3 350 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 CUZD1Q86UP6 607 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 CCAR1Q8IX12 1150 aaKnown RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 TBC1D3Q8IZP1 549 aaPredicted RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FAM185AQ8N0U4 392 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 BICD2Q8TD16 824 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 ADAMTS14Q8WXS8 1223 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 CCDC138Q96M89 665 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 SLITRK1Q96PX8 696 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 PRPF18Q99633 342 aaKnown RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 SORBS1Q9BX66 1292 aaKnown RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 POLDIP3Q9BY77 421 aaKnown RBP3.39□□□□□ -1.87
CPSF3-205ENST00000489629 RMI1Q9H9A7 625 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 FZD10Q9ULW2 581 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 PHTF1Q9UMS5 762 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 CNTN6Q9UQ52 1028 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 LZTS1Q9Y250 596 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 RAI2Q9Y5P3 530 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 SLC4A4Q9Y6R1 1079 aa3.39□□□□□ -1.87
CPSF3-205ENST00000489629 A0A1B0GUV1 79 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 MBD3L5A6NJ08 208 aaPredicted RBP3.38□□□□□ -1.87
CPSF3-205ENST00000489629 ASNA1O43681 348 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 LARGE1O95461 756 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 GLUD1P00367 558 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 AKT1P31749 480 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 GLUD2P49448 558 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 PDLIM4P50479 330 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 ART1P52961 327 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 RPL36AP83881 106 aaKnown RBP3.38□□□□□ -1.87
CPSF3-205ENST00000489629 ZNF569Q5MCW4 686 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 DNTTIP2Q5QJE6 756 aaKnown RBP3.38□□□□□ -1.87
CPSF3-205ENST00000489629 PRAMEF19Q5SWL8 479 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 C9orf50Q5SZB4 431 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM71Q6P5X7 295 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 SLC30A9Q6PML9 568 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 PRSS57Q6UWY2 283 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 IGFN1Q86VF2 1251 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM200AQ86VY9 491 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 CCDC25Q86WR0 208 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 CAMK1DQ8IU85 385 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 CLIP4Q8N3C7 705 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 RSC1A1Q92681 617 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 SGCZQ96LD1 299 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM120AQ9BXJ8 343 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 TM6SF1Q9BZW5 370 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 KLHL31Q9H511 634 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 C6orf106Q9H6K1 298 aaPredicted RBP3.38□□□□□ -1.87
CPSF3-205ENST00000489629 ZNF556Q9HAH1 456 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 TXLNGQ9NUQ3 528 aa3.38□□□□□ -1.87
CPSF3-205ENST00000489629 A0A087WYN8 130 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 TCRBV7S3A2A0A539 114 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 STMND1H3BQB6 276 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 PKMP14618 531 aaKnown RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 HOXB9P17482 250 aaPredicted RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ABCB4P21439 1286 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 GNLYP22749 145 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 KLRC2P26717 231 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 GNALP38405 381 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 CDK7P50613 346 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 RCAN1P53805 252 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 GAS1P54826 345 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 DSC1Q08554 894 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 KIF5AQ12840 1032 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 BTBD16Q32M84 506 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 C8orf82Q6P1X6 216 aaPredicted RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 KIAA1324Q6UXG2 1013 aaKnown RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ANKS1BQ7Z6G8 1248 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ENDOVQ8N8Q3 282 aaKnown RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 CMASQ8NFW8 434 aaPredicted RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 OR1N1Q8NGS0 311 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 WFIKKN2Q8TEU8 576 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 STYXQ8WUJ0 223 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 MUL1Q969V5 352 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 CDT1Q9H211 546 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 HIPK3Q9H422 1215 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 CATSPERBQ9H7T0 1116 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ACTR5Q9H9F9 607 aaPredicted RBP3.37□□□□□ -1.87
CPSF3-205ENST00000489629 Q9N2J8 555 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 SLC22A11Q9NSA0 550 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 TMEM248Q9NWD8 314 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ZDHHC7Q9NXF8 308 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 ARL15Q9NXU5 204 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 MDFICQ9P1T7 246 aa3.37□□□□□ -1.87
CPSF3-205ENST00000489629 AGAP5A6NIR3 686 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 AQP12BA6NM10 295 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 MS4A18H0YCH9 400 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 HEXIM1O94992 359 aaKnown RBP3.36□□□□□ -1.87
CPSF3-205ENST00000489629 SOX30O94993 753 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 ZNF12P17014 697 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 PRPH2P23942 346 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 HNF4GQ14541 408 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 TDRD12Q587J7 1177 aaKnown RBP3.36□□□□□ -1.87
CPSF3-205ENST00000489629 FSCBQ5H9T9 825 aa3.36□□□□□ -1.87
CPSF3-205ENST00000489629 C9orf57Q5W0N0 161 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms