RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RNF157Q96PX1 679 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ACSS3Q9H6R3 686 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PCDHB5Q9Y5E4 795 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ATXN2Q99700 1313 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 STAU1O95793 577 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 COX4I1P13073 169 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 BST1Q10588 318 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PCID2Q5JVF3 399 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 ZCCHC7Q8N3Z6 543 aaKnown RBP16.72■□□□□ 0.27
COL7A1-210ENST00000487017 PRRG3Q9BZD7 231 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 GRIP2Q9C0E4 1043 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM51Q9NW97 253 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 TPRKBQ9Y3C4 175 aa16.72■□□□□ 0.27
COL7A1-210ENST00000487017 COL5A2P05997 1499 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 ENTPD5O75356 428 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 SEC22BO75396 215 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 LTFP02788 710 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 NOS2P35228 1153 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 NOMO3P69849 1222 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 PRKCQQ04759 706 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 COL9A3Q14050 684 aaPredicted RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 MILR1Q7Z6M3 343 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 RASGEF1CQ8N431 466 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 PCDH20Q8N6Y1 951 aaKnown RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 ITFG1Q8TB96 612 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 RORBQ92753 470 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 CERS2Q96G23 380 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 MYL4P12829 197 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 ITGB6P18564 788 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 TMEM132BQ14DG7 1078 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 GLT6D1Q7Z4J2 308 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 POLNQ7Z5Q5 900 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 NECAB2Q7Z6G3 386 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 UNC93AQ86WB7 457 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 OOSP2Q86WS3 158 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 C4orf32Q8N8J7 132 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 UTP15Q8TED0 518 aaKnown RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 TNFRSF25Q93038 417 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 WNT8BQ93098 351 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 MBOAT7Q96N66 472 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 PADI4Q9UM07 663 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 BTN3A1O00481 513 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 WNT7AO00755 349 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 KRT36O76013 467 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 POMCP01189 267 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 DARSP14868 501 aaKnown RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 BBS12Q6ZW61 710 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 IQCKQ8N0W5 287 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 PWWP2AQ96N64 755 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 ELOVL4Q9GZR5 314 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 KLHL3Q9UH77 587 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 DUSP12Q9UNI6 340 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 RPL26L1Q9UNX3 145 aaKnown RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 UBIAD1Q9Y5Z9 338 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 SPATA31C1P0DKV0 1188 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 CYP2A7P20853 494 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 CNTN2Q02246 1040 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 SREBF2Q12772 1141 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 C15orf52Q6ZUT6 534 aaKnown RBP16.71■□□□□ 0.27
COL7A1-210ENST00000487017 IRF2BP1Q8IU81 584 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 ACMSDQ8TDX5 336 aa16.71■□□□□ 0.27
COL7A1-210ENST00000487017 KPNA6O60684 536 aa16.71■□□□□ 0.26
COL7A1-210ENST00000487017 USP17L7P0C7H9 530 aa16.71■□□□□ 0.26
COL7A1-210ENST00000487017 ACTRT2Q8TDY3 377 aa16.71■□□□□ 0.26
COL7A1-210ENST00000487017 MORF4L1Q9UBU8 362 aa16.71■□□□□ 0.26
COL7A1-210ENST00000487017 BAZ2BQ9UIF8 2168 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 HYIQ5T013 277 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 B3GNT6Q6ZMB0 384 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 SPPL2AQ8TCT8 520 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 SNRNP25Q9BV90 132 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ULBP1Q9BZM6 244 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ATP13A1Q9HD20 1204 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 KLHL20Q9Y2M5 609 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 C2CD2Q9Y426 696 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 MST1RQ04912 1400 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 BIRC5O15392 142 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ANPEPP15144 967 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 SERPINH1P50454 418 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 C21orf59P57076 290 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 CRADDP78560 199 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 TRIM25Q14258 630 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ECM1Q16610 540 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 DHDDSQ86SQ9 333 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 NDEL1Q9GZM8 345 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 AAASQ9NRG9 546 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 PIK3R1P27986 724 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 NRF1Q16656 503 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 NEPROQ6NW34 567 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ZDHHC13Q8IUH4 622 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 TMEM132CQ8N3T6 1108 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 HGH1Q9BTY7 390 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 MTIF3Q9H2K0 278 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 STN1Q9H668 368 aaKnown RBP16.7■□□□□ 0.26
COL7A1-210ENST00000487017 MIEF1Q9NQG6 463 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 FAM198AQ9UFP1 575 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 WNT10BO00744 389 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 SPTLC1O15269 473 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 ALDH1A2O94788 518 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 GSTM1P09488 218 aa16.7■□□□□ 0.26
COL7A1-210ENST00000487017 LTA4HP09960 611 aaKnown RBP16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms