RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 LMAN2Q12907 356 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 TFDP2Q14188 446 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 SMTNL2Q2TAL5 461 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 GAB4Q2WGN9 574 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 PLEKHG6Q3KR16 790 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 PITRM1Q5JRX3 1037 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 KCNT1Q5JUK3 1230 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 MBLAC2Q68D91 279 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 SERPINA13PQ6UXR4 307 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 RFX8Q6ZV50 586 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 SYT13Q7L8C5 426 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 PEX26Q7Z412 305 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 TFAP2DQ7Z6R9 452 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 KIAA0907Q7Z7F0 614 aaPredicted RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 DSG4Q86SJ6 1040 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 C14orf80Q86SX3 495 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 C12orf40Q86WS4 652 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 MAML2Q8IZL2 1156 aaPredicted RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 BBS5Q8N3I7 341 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 SUMF1Q8NBK3 374 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 RPLP0P6Q8NHW5 317 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 TPCN2Q8NHX9 752 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 USP33Q8TEY7 942 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 CASKIN2Q8WXE0 1202 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 RBM41Q96IZ5 413 aaKnown RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 FERMT1Q9BQL6 677 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 ZNF670Q9BS34 389 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 DESI2Q9BSY9 194 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 ADAM33Q9BZ11 813 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 ATP13A1Q9HD20 1204 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 MPP6Q9NZW5 540 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 THAP10Q9P2Z0 257 aaPredicted RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 FBXO4Q9UKT5 387 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 SMG5Q9UPR3 1016 aaKnown RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 MTF2Q9Y483 593 aaPredicted RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 MYOFQ9NZM1 2061 aa8.48□□□□□ -1.05
SF3A1-208ENST00000485618 RIF1Q5UIP0 2472 aaKnown RBP8.48□□□□□ -1.05
SF3A1-208ENST00000485618 DMDP11532 3685 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 LRRD1A4D1F6 860 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 CBX4O00257 560 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 BUB1O43683 1085 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 CNTN5O94779 1100 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 APBB3O95704 486 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 TNNT1P13805 278 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 HOXA6P31267 233 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 HOXC13P31276 330 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 CD70P32970 193 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 GJC1P36383 396 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 VASPP50552 380 aaPredicted RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 SGSHP51688 502 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 RWDD2BP57060 319 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 COPS2P61201 443 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 SLC25A11Q02978 314 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 CSTF1Q05048 431 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 MTAPQ13126 283 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 GEN1Q17RS7 908 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 RSPO4Q2I0M5 234 aaPredicted RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ZNF528Q3MIS6 628 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ACCSLQ4AC99 568 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ALFQ53S48 1182 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 MANEALQ5VSG8 457 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ADIPOR2Q86V24 386 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 C11orf74Q86VG3 221 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ZNF683Q8IZ20 524 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ZNF687Q8N1G0 1237 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 UMODL1-AS1Q8N2C9 162 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 PHTF2Q8N3S3 785 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ARFGAP1Q8N6T3 406 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 DCAF4L2Q8NA75 395 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ATP11CQ8NB49 1132 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 TXNDC5Q8NBS9 432 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 TRIM58Q8NG06 486 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ATRIPQ8WXE1 791 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 LACRTQ9GZZ8 138 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 PCDH18Q9HCL0 1135 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 FBRSL1Q9HCM7 1045 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 ANLNQ9NQW6 1124 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 CWC15Q9P013 229 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 DNAI1Q9UI46 699 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 MMP17Q9ULZ9 603 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 GUCA1BQ9UMX6 200 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 PPP2R2CQ9Y2T4 447 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 REXO2Q9Y3B8 237 aaKnown RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 PCDHGA2Q9Y5H1 932 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 PCDHA3Q9Y5H8 950 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 SNX10Q9Y5X0 201 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 RAD54BQ9Y620 910 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 STON1Q9Y6Q2 735 aa8.47□□□□□ -1.05
SF3A1-208ENST00000485618 KIF26AQ9ULI4 1882 aaPredicted RBP8.47□□□□□ -1.05
SF3A1-208ENST00000485618 FANCMQ8IYD8 2048 aa8.46□□□□□ -1.05
SF3A1-208ENST00000485618 CCDC163A0A0D9SF12 145 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 TARSL2A2RTX5 802 aaKnown RBP8.46□□□□□ -1.06
SF3A1-208ENST00000485618 PRRT4C9JH25 899 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 FAM72CH0Y354 149 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 KDELR3O43731 214 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 KIF5CO60282 957 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 NEBLO76041 1014 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 TJP3O95049 919 aa8.46□□□□□ -1.06
SF3A1-208ENST00000485618 PAPSS2O95340 614 aaPredicted RBP8.46□□□□□ -1.06
SF3A1-208ENST00000485618 KRT1P04264 644 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms