RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 SIX6OS1Q8N1H7 587 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 STK40Q8N2I9 435 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 SLC25A45Q8N413 288 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 FAM181AQ8N9Y4 354 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 HJURPQ8NCD3 748 aaPredicted RBP5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 CCDC150Q8NCX0 1101 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 OR4C6Q8NH72 309 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 RNF139Q8WU17 664 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 ZNF775Q96BV0 537 aaPredicted RBP5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 IPO9Q96P70 1041 aaKnown RBP5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 FAM129BQ96TA1 746 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 NUCKS1Q9H1E3 243 aaKnown RBP5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 MMRN2Q9H8L6 949 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 LRRC4Q9HBW1 653 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 TMEM8AQ9HCN3 771 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 ASCL3Q9NQ33 180 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 CNGB3Q9NQW8 809 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 ABCC13Q9NSE7 274 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 STIM2Q9P246 746 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 CYTH4Q9UIA0 394 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 ERVW-1Q9UQF0 538 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 DMTF1Q9Y222 760 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 TRAF3IP3Q9Y228 551 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 CENPEQ02224 2701 aa5.31□□□□□ -1.56
SNRNP40-204ENST00000474025 NYNRINQ9P2P1 1898 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CRYBG3Q68DQ2 2970 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3DA0A087WVF3 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3IA0A087WXS9 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3EA0A087X179 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3KA0A087X1G2 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 LY6G6EA0A0G2JKS1 128 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 A0A1B0GVM2 712 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 A0A1W2PNU3 283 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3FA6NER0 549 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3LB9A6J9 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 O00370 1275 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 KLK10O43240 276 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 PLRG1O43660 514 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CALUO43852 315 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 LZTS3O60299 673 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 OPA1O60313 960 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 MAGEC1O60732 1142 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 RTN2O75298 545 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 USP12O75317 370 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 LUC7L3O95232 432 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 IL1BP01584 269 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3HP0C7X1 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 GIMD1P0DJR0 217 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SETSIPP0DME0 302 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CKMT1AP12532 417 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 KRT13P13646 458 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 VAV1P15498 845 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 DGKAP23743 735 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 MAT2AP31153 395 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 GTF2H1P32780 548 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 NUDT1P36639 197 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 LSSP48449 732 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 STK19P49842 368 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 MXI1P50539 228 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBX4P57082 545 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 MCCD1P59942 119 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SKOR1P84550 965 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 ECT2LQ008S8 904 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SRSF1Q07955 248 aaKnown RBP eCLIP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 VAC14Q08AM6 782 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SERINC3Q13530 473 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CDH18Q13634 790 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 ELAVL3Q14576 367 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SGO2Q562F6 1265 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 DCAF6Q58WW2 860 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 MS4A13Q5J8X5 152 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 AGBL4Q5VU57 503 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 KRT39Q6A163 491 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3GQ6DHY5 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3CQ6IPX1 549 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 PRPF39Q86UA1 669 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TRIM69Q86WT6 500 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 FAM186BQ8IYM0 893 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CEP57L1Q8IYX8 460 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TBC1D3Q8IZP1 549 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 LSMEM2Q8N112 164 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CFAP52Q8N1V2 620 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 SCML4Q8N228 414 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 CARNMT1Q8N4J0 409 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 TMEM145Q8NBT3 493 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 FBXL13Q8NEE6 735 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 UBA3Q8TBC4 463 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 KCNE4Q8WWG9 221 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 KCTD13Q8WZ19 329 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 PTPRN2Q92932 1015 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 AZIN2Q96A70 460 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 EEF2KMTQ96G04 330 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 PAGE5Q96GU1 130 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 INTS4Q96HW7 963 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 VCPIP1Q96JH7 1222 aa5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 RPL10LQ96L21 214 aaKnown RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 FCRL2Q96LA5 508 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 ZNF396Q96N95 335 aaPredicted RBP5.3□□□□□ -1.56
SNRNP40-204ENST00000474025 DEPDC7Q96QD5 511 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms