RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TXNDC9O14530 226 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 ITM2AO43736 263 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 DCTN3O75935 186 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 INHAP05111 366 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 MX2P20592 715 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 OR1D2P34982 312 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 CASP2P42575 452 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 GALNT3Q14435 633 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 ZNF235Q14590 738 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 DRICH1Q6PGQ1 229 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 STRADAQ7RTN6 431 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 PIGWQ7Z7B1 504 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 IFNLR1Q8IU57 520 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 RIBC1Q8N443 379 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 PCSK9Q8NBP7 692 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 ACVR1CQ8NER5 493 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 AGAP11Q8TF27 550 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 KCTD4Q8WVF5 259 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 SIGLEC10Q96LC7 697 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 GPR62Q9BZJ7 368 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 TXLNGQ9NUQ3 528 aa14.02□□□□□ -0.16
CCDC88A-211ENST00000471947 J3KR12 359 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 PDE5AO76074 875 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 ITGA2BP08514 1039 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 ITGB6P18564 788 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 KCNQ1P51787 676 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 PLIN5Q00G26 463 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 RASA2Q15283 850 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 PLEKHG4Q58EX7 1191 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 ATG16L1Q676U5 607 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 ZDHHC17Q8IUH5 632 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 WDR75Q8IWA0 830 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 SKA2Q8WVK7 121 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 IFT43Q96FT9 208 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 CERS2Q96G23 380 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 NPY6RQ99463 290 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC39A8Q9C0K1 460 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 CCSER2Q9H7U1 834 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 VRTNQ9H8Y1 702 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 BPIFA1Q9NP55 256 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 TK2O00142 265 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 AIM2O14862 343 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 FYNP06241 537 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 KCNE1P15382 129 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 ALDH7A1P49419 539 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 DSC2Q02487 901 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 PACS1Q6VY07 963 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 DCBLD1Q8N8Z6 715 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 OXCT2Q9BYC2 517 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 RXFP1Q9HBX9 757 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 TBC1D13Q9NVG8 400 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 MARCH2Q9P0N8 246 aa14.02□□□□□ -0.17
CCDC88A-211ENST00000471947 TMEM88BA6NKF7 163 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PRRG1O14668 218 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 GJA1P17302 382 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 TWF1Q12792 350 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 UPP1Q16831 310 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PKDCCQ504Y2 493 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 VARS2Q5ST30 1063 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 LGI2Q8N0V4 545 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 CENPTQ96BT3 561 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 FCRL3Q96P31 734 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 WDR55Q9H6Y2 383 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 HMX1Q9NP08 348 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 CNGB3Q9NQW8 809 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ZMYND8Q9ULU4 1186 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 KCTD3Q9Y597 815 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 BCLAF3A2AJT9 711 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 C9JVG2 144 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ABHD2P08910 425 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 CKBP12277 381 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 WARSP23381 471 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 NAGLUP54802 743 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 WASHC5Q12768 1159 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 FOXD4Q12950 439 aaPredicted RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ICE2Q659A1 982 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC9A4Q6AI14 798 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ITPRIPL1Q6GPH6 555 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 C6orf89Q6UWU4 347 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PLD6Q8N2A8 252 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 BANPQ8N9N5 519 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 QKIQ96PU8 341 aaKnown RBP eCLIP14.01□□□□□ -0.172e-7■■■■□ 23.8
CCDC88A-211ENST00000471947 TMEM109Q9BVC6 243 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 TM6SF2Q9BZW4 377 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ATP6AP2A0A1C7CYW4 349 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 NDC80O14777 642 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 OPHN1O60890 802 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 ATP6AP2O75787 350 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PAPOLAP51003 745 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 EP400NLQ6ZTU2 488 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PSTKQ8IV42 348 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 DENND1CQ8IV53 801 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 LRRC40Q9H9A6 602 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 GDAP2Q9NXN4 497 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 PLA2G4CQ9UP65 541 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 APOBEC2Q9Y235 224 aaKnown RBP14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 GIT1Q9Y2X7 761 aa14.01□□□□□ -0.17
CCDC88A-211ENST00000471947 A0A0U1RQF3 1178 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 HNRNPLP14866 589 aaKnown RBP eCLIP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms