RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 VAV1P15498 845 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 CYP11B1P15538 503 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 SCNN1AP37088 669 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 GABRB2P47870 512 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 CXCR3P49682 368 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 NUMBP49757 651 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 CCT8P50990 548 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 IRAK1P51617 712 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 ADPRHP54922 357 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 ZNF177Q13360 481 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 KCNJ12Q14500 433 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 CT47A1Q5JQC4 288 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 KCNT1Q5JUK3 1230 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 BRMS1LQ5PSV4 323 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 LRSAM1Q6UWE0 723 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 C14orf80Q86SX3 495 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 SLCO6A1Q86UG4 719 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 PNPLA1Q8N8W4 532 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 SLC6A18Q96N87 628 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 SPAG5Q96R06 1193 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 ACE2Q9BYF1 805 aaPredicted RBP17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 PIGVQ9NUD9 493 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 TMEM51Q9NW97 253 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 ARHGEF38Q9NXL2 777 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 SLC25A13Q9UJS0 675 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 TPX2Q9ULW0 747 aaKnown RBP17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 STAP1Q9ULZ2 295 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 OR51B4Q9Y5P0 310 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 NBEAQ8NFP9 2946 aa17.05■□□□□ 0.32
CCDC28B-204ENST00000469003 H0Y8X5 98 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 PES1O00541 588 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 ATP9BO43861 1147 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 PCDHGA12O60330 932 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 DFNA5O60443 496 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 ADCY5O95622 1261 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 GGCXP38435 758 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 SULT1E1P49888 294 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 CDH4P55283 916 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 C21orf59P57076 290 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 RNASE9P60153 205 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 DSG4Q86SJ6 1040 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 OR52K2Q8NGK3 314 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 OR14C36Q8NHC7 312 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 NT5C3BQ969T7 300 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 SKA1Q96BD8 255 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 C18orf8Q96DM3 657 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 PGAP3Q96FM1 320 aaPredicted RBP17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 NAA15Q9BXJ9 866 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 TKTL2Q9H0I9 626 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 SIK2Q9H0K1 926 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 WDCPQ9H6R7 721 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 EBF2Q9HAK2 575 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 SAMSN1Q9NSI8 373 aaKnown RBP17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 BTBD3Q9Y2F9 522 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 TBC1D30Q9Y2I9 924 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 WDFY3Q8IZQ1 3526 aa17.04■□□□□ 0.32
CCDC28B-204ENST00000469003 KNL1Q8NG31 2342 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 KCNK3O14649 394 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 F9P00740 461 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 UCHL3P15374 230 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 TFE3P19532 575 aaPredicted RBP17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 EEF1GP26641 437 aaKnown RBP17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 DRD3P35462 400 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 ACCSLQ4AC99 568 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 TCP11X2Q5H9J9 407 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 ERICH1Q86X53 443 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 XYLT1Q86Y38 959 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 OR8D1Q8WZ84 308 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 FAM131CQ96AQ9 280 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 ANLNQ9NQW6 1124 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 TOR4AQ9NXH8 423 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 VPS28Q9UK41 221 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 PAXBP1Q9Y5B6 917 aa17.03■□□□□ 0.32
CCDC28B-204ENST00000469003 CABIN1Q9Y6J0 2220 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 ALOX15BO15296 676 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 SLC7A4O43246 635 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 CNTN5O94779 1100 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 DKK1O94907 266 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 LSM8O95777 96 aaKnown RBP17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 WNT1P04628 370 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 CD38P28907 300 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 GRK6P43250 576 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 DEUP1Q05D60 604 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 DLG2Q15700 870 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 SLC25A52Q3SY17 297 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 ACBD5Q5T8D3 534 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 FAM102AQ5T9C2 384 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 TAF3Q5VWG9 929 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 FAM46CQ5VWP2 391 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 ZNF683Q8IZ20 524 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 SH2D3CQ8N5H7 860 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 MSANTD4Q8NCY6 345 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 TBCBQ99426 244 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 STK33Q9BYT3 514 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 MUC3BQ9H195 1237 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 KDM4CQ9H3R0 1056 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 AASDHPPTQ9NRN7 309 aa17.02■□□□□ 0.32
CCDC28B-204ENST00000469003 PTPRBP23467 1997 aa17.02■□□□□ 0.31
CCDC28B-204ENST00000469003 PLXNB3Q9ULL4 1909 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms