RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ADAM22Q9P0K1 906 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 ZNF212Q9UDV6 495 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 VPS28Q9UK41 221 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 ZBTB32Q9Y2Y4 487 aaPredicted RBP22.38■■□□□ 1.17
LIME1-203ENST00000465591 PAXBP1Q9Y5B6 917 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 PLXNA2O75051 1894 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 CHD8Q9HCK8 2581 aa22.38■■□□□ 1.17
LIME1-203ENST00000465591 DOCK9Q9BZ29 2069 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 A0A1B0GTW7 788 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 A0A1W2PP55 124 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 SNAP91O60641 907 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 GNSP15586 552 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 NSFP46459 744 aaKnown RBP22.37■■□□□ 1.17
LIME1-203ENST00000465591 PSMD8P48556 350 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 NOVA1P51513 510 aaKnown RBP22.37■■□□□ 1.17
LIME1-203ENST00000465591 METAP1P53582 386 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 GSCP56915 257 aaPredicted RBP22.37■■□□□ 1.17
LIME1-203ENST00000465591 BNC1Q01954 994 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 MON1BQ7L1V2 547 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 IRF2BP2Q7Z5L9 587 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 AADATQ8N5Z0 425 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 SNX19Q92543 992 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 BIRC7Q96CA5 298 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 NAP1L5Q96NT1 182 aaPredicted RBP22.37■■□□□ 1.17
LIME1-203ENST00000465591 HAPLN3Q96S86 360 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 SYT11Q9BT88 431 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 PCED1AQ9H1Q7 454 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 NEUROG2Q9H2A3 272 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 SEPT11Q9NVA2 429 aaKnown RBP22.37■■□□□ 1.17
LIME1-203ENST00000465591 CHD5Q8TDI0 1954 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 TMEM131Q92545 1883 aa22.37■■□□□ 1.17
LIME1-203ENST00000465591 A0A0D9SEW6 157 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 TCRBV5S1A1TA0A578 114 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 SMTNL1A8MU46 457 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 ATP9BO43861 1147 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 RNASEH1O60930 286 aaKnown RBP22.36■■□□□ 1.17
LIME1-203ENST00000465591 SRGAP2O75044 1071 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 MT-CO1P00395 513 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 RHOCP08134 193 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 SLC8A1P32418 973 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 RFC1P35251 1148 aaPredicted RBP22.36■■□□□ 1.17
LIME1-203ENST00000465591 VASPP50552 380 aaPredicted RBP22.36■■□□□ 1.17
LIME1-203ENST00000465591 ATXN3P54252 364 aaPredicted RBP22.36■■□□□ 1.17
LIME1-203ENST00000465591 GRIK2Q13002 908 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 USP30Q70CQ3 517 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 DEFB124Q8NES8 71 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 GANCQ8TET4 914 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 ORAI3Q9BRQ5 295 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 MUC3BQ9H195 1237 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 SGK2Q9HBY8 427 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 SCML1Q9UN30 329 aa22.36■■□□□ 1.17
LIME1-203ENST00000465591 TP53BP1Q12888 1972 aaPredicted RBP22.36■■□□□ 1.17
LIME1-203ENST00000465591 SYCE3A1L190 88 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 BCAT2O15382 392 aaPredicted RBP22.35■■□□□ 1.17
LIME1-203ENST00000465591 GJB3O75712 270 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 CSRP1P21291 193 aaKnown RBP22.35■■□□□ 1.17
LIME1-203ENST00000465591 SDC4P31431 198 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 NNMTP40261 264 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 PTPN9P43378 593 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 HDAC4P56524 1084 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 SEMA3BQ13214 749 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 ELAVL3Q14576 367 aaKnown RBP22.35■■□□□ 1.17
LIME1-203ENST00000465591 E4F1Q66K89 784 aaPredicted RBP22.35■■□□□ 1.17
LIME1-203ENST00000465591 LRRC31Q6UY01 552 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 SH2D3CQ8N5H7 860 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 OR7D4Q8NG98 312 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 CENPIQ92674 756 aaPredicted RBP22.35■■□□□ 1.17
LIME1-203ENST00000465591 TAS2R14Q9NYV8 317 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 VPS51Q9UID3 782 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 SLC25A13Q9UJS0 675 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 SARDHQ9UL12 918 aa22.35■■□□□ 1.17
LIME1-203ENST00000465591 A0A1B0GTH6 734 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 C10orf142B7Z368 130 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 K7ERQ8 282 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 PLK4O00444 970 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 RNASEH2AO75792 299 aaKnown RBP22.34■■□□□ 1.17
LIME1-203ENST00000465591 FSBPO95073 299 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 IGHV4-34P06331 123 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 SYPP08247 313 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 KRT3P12035 628 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 FERP16591 822 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 GLDCP23378 1020 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 ADRA1BP35368 520 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 GALCP54803 685 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 DLG2Q15700 870 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 KLHL40Q2TBA0 621 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 ACCSLQ4AC99 568 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 MANEALQ5VSG8 457 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 WDR59Q6PJI9 974 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 Q6ZVU0 165 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 PIP4P1Q86T03 277 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 SETD3Q86TU7 594 aaPredicted RBP22.34■■□□□ 1.17
LIME1-203ENST00000465591 CCDC185Q8N715 623 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 C3orf20Q8ND61 904 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 PPP1R9BQ96SB3 815 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 DNAAF2Q9NVR5 837 aaKnown RBP22.34■■□□□ 1.17
LIME1-203ENST00000465591 TMEM51Q9NW97 253 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 ADAMTS1Q9UHI8 967 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 NCKAP1Q9Y2A7 1128 aa22.34■■□□□ 1.17
LIME1-203ENST00000465591 FAM47DPA6NHR8 397 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms