RNA–Protein interactions for RNA: ENST00000464078.5

HMGN1-210, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 508 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-210ENST00000464078 PRPF39Q86UA1 669 aaKnown RBP17.83■□□□□ 0.44
HMGN1-210ENST00000464078 TBC1D3Q8IZP1 549 aaPredicted RBP17.83■□□□□ 0.44
HMGN1-210ENST00000464078 FCRL3Q96P31 734 aaPredicted RBP17.83■□□□□ 0.44
HMGN1-210ENST00000464078 CNTN6Q9UQ52 1028 aa17.83■□□□□ 0.44
HMGN1-210ENST00000464078 A0A1B0GVM2 712 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 TCAF2A6NFQ2 919 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 F5H5T6 163 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 ALOX15BO15296 676 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 VAV1P15498 845 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 OXCT1P55809 520 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 EIF4EBP2Q13542 120 aaPredicted RBP17.82■□□□□ 0.44
HMGN1-210ENST00000464078 ZC3H12AQ5D1E8 599 aaKnown RBP17.82■□□□□ 0.44
HMGN1-210ENST00000464078 AGBL4Q5VU57 503 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP17.82■□□□□ 0.44
HMGN1-210ENST00000464078 CCAR2Q8N163 923 aaKnown RBP17.82■□□□□ 0.44
HMGN1-210ENST00000464078 FGF11Q92914 225 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 CEP63Q96MT8 703 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 PRMT1Q99873 361 aaKnown RBP17.82■□□□□ 0.44
HMGN1-210ENST00000464078 SLC4A5Q9BY07 1137 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 CLCA2Q9UQC9 943 aa17.82■□□□□ 0.44
HMGN1-210ENST00000464078 DOCK9Q9BZ29 2069 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 TEX51A0A1B0GUA7 166 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 KCNU1A8MYU2 1149 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 CAPN9O14815 690 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 BRINP1O60477 761 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 RTN2O75298 545 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 TRUB2O95900 331 aaKnown RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 CALCAP01258 141 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 PRB1P04280 392 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 PDGFRAP16234 1089 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 GLDCP23378 1020 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 ACTN2P35609 894 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 METAP1P53582 386 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 YWHAZP63104 245 aaKnown RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 INSM1Q01101 510 aaPredicted RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 CETN1Q12798 172 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 SETMARQ53H47 684 aaPredicted RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 FAM46CQ5VWP2 391 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 CXorf57Q6NSI4 855 aaKnown RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 ERICH1Q86X53 443 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 FMR1NBQ8N0W7 255 aaPredicted RBP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 OR8D1Q8WZ84 308 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 POPDC2Q9HBU9 364 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 ST7Q9NRC1 585 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.81■□□□□ 0.44
HMGN1-210ENST00000464078 RAI2Q9Y5P3 530 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 COL6A6A6NMZ7 2263 aa17.81■□□□□ 0.44
HMGN1-210ENST00000464078 PSMA7O14818 248 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 ATP9BO43861 1147 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 RNGTTO60942 597 aaKnown RBP17.8■□□□□ 0.44
HMGN1-210ENST00000464078 SMC2O95347 1197 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 NUCB2P80303 420 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 E2F1Q01094 437 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 TLE3Q04726 772 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 CNTN1Q12860 1018 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 ZNF211Q13398 564 aaPredicted RBP17.8■□□□□ 0.44
HMGN1-210ENST00000464078 TBC1D25Q3MII6 688 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 RABGAP1LQ5R372 815 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 FOXR2Q6PJQ5 311 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 TMEM110Q86TL2 294 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 ATP6V0D2Q8N8Y2 350 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 TMEM145Q8NBT3 493 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 ERCC4Q92889 916 aaPredicted RBP17.8■□□□□ 0.44
HMGN1-210ENST00000464078 PREBQ9HCU5 417 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 SARDHQ9UL12 918 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 PPM1HQ9ULR3 514 aa17.8■□□□□ 0.44
HMGN1-210ENST00000464078 PRAMEF26H0Y7S4 382 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 MCF2LO15068 1137 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 SLC2A3P11169 496 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 MAT2AP31153 395 aaKnown RBP17.79■□□□□ 0.44
HMGN1-210ENST00000464078 STAT4Q14765 748 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 RRAGAQ7L523 313 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 GPR155Q7Z3F1 870 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 ARHGEF19Q8IW93 802 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 ALG14Q96F25 216 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 DHTKD1Q96HY7 919 aaPredicted RBP17.79■□□□□ 0.44
HMGN1-210ENST00000464078 KREMEN1Q96MU8 473 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 MED15Q96RN5 788 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 PPP1R9BQ96SB3 815 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 THAP9Q9H5L6 903 aa17.79■□□□□ 0.44
HMGN1-210ENST00000464078 E5RJQ4 531 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 C1QTNF3-AMACRE9PGA6 284 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 TRIM38O00635 465 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 SIGLEC6O43699 453 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 PITX1P78337 314 aaPredicted RBP17.78■□□□□ 0.44
HMGN1-210ENST00000464078 MTA1Q13330 715 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 STIM1Q13586 685 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 CCDC40Q4G0X9 1142 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 DENND1BQ6P3S1 775 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 CIR1Q86X95 450 aaPredicted RBP17.78■□□□□ 0.44
HMGN1-210ENST00000464078 SLC25A45Q8N413 288 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 OR4C6Q8NH72 309 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 SMARCE1Q969G3 411 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 SLC12A6Q9UHW9 1150 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 SLC25A13Q9UJS0 675 aa17.78■□□□□ 0.44
HMGN1-210ENST00000464078 MYO18BQ8IUG5 2567 aa17.77■□□□□ 0.44
HMGN1-210ENST00000464078 MED7O43513 233 aa17.77■□□□□ 0.44
HMGN1-210ENST00000464078 SDC3O75056 442 aa17.77■□□□□ 0.44
HMGN1-210ENST00000464078 GLI1P08151 1106 aa17.77■□□□□ 0.44
HMGN1-210ENST00000464078 CCR1P32246 355 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms