RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TMEM62Q0P6H9 643 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 STRA8Q7Z7C7 330 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 DCLK2Q8N568 766 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 METTL25Q8N6Q8 603 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 CCDC185Q8N715 623 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TDRD5Q8NAT2 981 aaKnown RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 OR52K1Q8NGK4 314 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 ZFP28Q8NHY6 868 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 CAAP1Q9H8G2 361 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 GBA2Q9HCG7 927 aaPredicted RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 COPG2Q9UBF2 871 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 SLC39A10Q9ULF5 831 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 GNEQ9Y223 722 aaKnown RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 PCDHA11Q9Y5I1 949 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TMEM233B4DJY2 109 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TK2O00142 265 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 CRTAMO95727 393 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 NME3Q13232 169 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 GRB14Q14449 540 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TMEM132DQ14C87 1099 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 RPS27LQ71UM5 84 aaKnown RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 PQLC1Q8N2U9 271 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TTC16Q8NEE8 873 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 OR6B3Q8NGW1 331 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 PPWD1Q96BP3 646 aaKnown RBP12.7□□□□□ -0.38
HDAC4-208ENST00000463007 ERLEC1Q96DZ1 483 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TMEM165Q9HC07 324 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 GPAMQ9HCL2 828 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 TCF7L2Q9NQB0 619 aa12.7□□□□□ -0.38
HDAC4-208ENST00000463007 BRCA2P51587 3418 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DPYSL4O14531 572 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TRDMT1O14717 391 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 JUNP05412 331 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 HDCP19113 662 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 MS4A2Q01362 244 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ART3Q13508 389 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ZNF460Q14592 562 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ALKAL1Q6UXT8 129 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 RNF135Q8IUD6 432 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TRIML2Q8N7C3 387 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TMIGD2Q96BF3 282 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 SNX15Q9NRS6 342 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ZNF711Q9Y462 761 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TSC2P49815 1807 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 FAM159BA6NKW6 160 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 GLRA3O75311 464 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TFAP2AP05549 437 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 MMP3P08254 477 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 PABPC4LP0CB38 370 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 SMPD1P17405 629 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 NAGLUP54802 743 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 MYLK3Q32MK0 819 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 UGT2A3Q6UWM9 527 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 KYAT3Q6YP21 454 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ZNF410Q86VK4 478 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DIS3LQ8TF46 1054 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 EME1Q96AY2 570 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 MFSD3Q96ES6 412 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ZMAT2Q96NC0 199 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DCUN1D5Q9BTE7 237 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 C11orf84Q9BUA3 381 aaPredicted RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 PCDHAC1Q9H158 963 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ATXN10Q9UBB4 475 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 AP4E1Q9UPM8 1137 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DERAQ9Y315 318 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 SF3B1O75533 1304 aaKnown RBP eCLIP12.69□□□□□ -0.382e-7■■■■■ 156.8
HDAC4-208ENST00000463007 BTBD19C9JJ37 291 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 H3BNX3 289 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 H3BRB1 525 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TPST1O60507 370 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DNAJA2O60884 412 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 GPR32O75388 356 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 RPL34P49207 117 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 MAPK10P53779 464 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 CDH15P55291 814 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 HDAC4P56524 1084 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 CDKL1Q00532 357 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 OLFML1Q6UWY5 402 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ACTRT2Q8TDY3 377 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TUT1Q9H6E5 874 aaKnown RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 TASP1Q9H6P5 420 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 DPP3Q9NY33 737 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 ZNF180Q9UJW8 692 aa12.69□□□□□ -0.38
HDAC4-208ENST00000463007 COL4A4P53420 1690 aaPredicted RBP12.69□□□□□ -0.38
HDAC4-208ENST00000463007 RNF103O00237 685 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PDHXO00330 501 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PPEF2O14830 753 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 ASLP04424 464 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 HNRNPCP07910 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 P4HA1P13674 534 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 PITX1P78337 314 aaPredicted RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 GRIK4Q16099 956 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 DUSP28Q4G0W2 176 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 RARS2Q5T160 578 aaKnown RBP12.68□□□□□ -0.38
HDAC4-208ENST00000463007 LIMS2Q7Z4I7 341 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 DSELQ8IZU8 1212 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 BRI3BPQ8WY22 251 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 HSPBAP1Q96EW2 488 aa12.68□□□□□ -0.38
HDAC4-208ENST00000463007 SNX27Q96L92 541 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms