RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SNX27Q96L92 541 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 CATSPER2Q96P56 530 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 PNPOQ9NVS9 261 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 SUN2Q9UH99 717 aa11.87□□□□□ -0.51
NPHP4-204ENST00000460696 CASQ2O14958 399 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CLGNO14967 610 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 BPGMP07738 259 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 F7P08709 466 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 IQCF3P0C7M6 154 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TFE3P19532 575 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 NME5P56597 212 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SLC34A1Q06495 639 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TBCCQ15814 346 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 USP13Q92995 863 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 FBXO32Q969P5 355 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MAF1Q9H063 256 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 LRMDAQ9H2I8 198 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CDHR5Q9HBB8 845 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 GPAMQ9HCL2 828 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 FAM105AQ9NUU6 356 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TRHDEQ9UKU6 1024 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MYBPHLA2RUH7 354 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 BUD23O43709 281 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 PIGNO95427 931 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 APOA4P06727 396 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 EDNRBP24530 442 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 L1CAMP32004 1257 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 PTPN9P43378 593 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CRYBB1P53674 252 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CTBP1Q13363 440 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TRMT5Q32P41 509 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 NBPF20Q3BBV1 942 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 RARS2Q5T160 578 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 DCAKDQ8WVC6 231 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 PYDC1Q8WXC3 89 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MYLPFQ96A32 169 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MFSD3Q96ES6 412 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TSPAN17Q96FV3 270 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 OMDQ99983 421 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MTG1Q9BT17 334 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 EML4Q9HC35 981 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MORF4L1Q9UBU8 362 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 AURKCQ9UQB9 309 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 COL1A2P08123 1366 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SMIM35A0A1B0GVV1 85 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SLC12A8A0AV02 714 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TBL3Q12788 808 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CLPTM1LQ96KA5 538 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 ZMAT2Q96NC0 199 aaKnown RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CENPKQ9BS16 269 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 DENND2DQ9H6A0 471 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 ANLNQ9NQW6 1124 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SNX15Q9NRS6 342 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SFMBT1Q9UHJ3 866 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TRPV2Q9Y5S1 764 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 RNF103-CHMP3A0A140T963 221 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MAGEB16A2A368 324 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 ZBTB24O43167 697 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 NDUFS3O75489 264 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 ENDOD1O94919 500 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 IRF1P10914 325 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CD52P31358 61 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CDH5P33151 784 aaPredicted RBP11.86□□□□□ -0.51
NPHP4-204ENST00000460696 NPY2RP49146 381 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CCDC153Q494R4 210 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SLC39A12Q504Y0 691 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 MARC1Q5VT66 337 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SYPL2Q5VXT5 272 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 OLFML1Q6UWY5 402 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 LRRC74BQ6ZQY2 392 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 FRA10AC1Q70Z53 315 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 TRIML2Q8N7C3 387 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 AZIN2Q96A70 460 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SCLYQ96I15 445 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 CNTN6Q9UQ52 1028 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 DERAQ9Y315 318 aa11.86□□□□□ -0.51
NPHP4-204ENST00000460696 SPTBN2O15020 2390 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 YJEFN3A6XGL0 299 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 E7ENQ6 273 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 GSC2O15499 205 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 DDHD2O94830 711 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 PSMG1O95456 288 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 THRAP10827 490 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 ABCE1P61221 599 aaKnown RBP11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CYTH1Q15438 398 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 C16orf89Q6UX73 402 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TMEM110Q86TL2 294 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 ZNF567Q8N184 647 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 PDZD8Q8NEN9 1154 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 PHACTR1Q9C0D0 580 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CHRAC1Q9NRG0 131 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 NCKIPSDQ9NZQ3 722 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CITO14578 2027 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 COL5A3P25940 1745 aaPredicted RBP11.85□□□□□ -0.51
NPHP4-204ENST00000460696 DAB1O75553 588 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TOP3BO95985 862 aaKnown RBP11.85□□□□□ -0.51
NPHP4-204ENST00000460696 CD151P48509 253 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TLE2Q04725 743 aa11.85□□□□□ -0.51
NPHP4-204ENST00000460696 TWF1Q12792 350 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms