RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 ZNF683Q8IZ20 524 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 CCAR2Q8N163 923 aaKnown RBP8.96□□□□□ -0.98
COL28A1-205ENST00000453441 PHTF2Q8N3S3 785 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ARFGAP1Q8N6T3 406 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ACRBPQ8NEB7 543 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 TTC8Q8TAM2 541 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ACDQ96AP0 544 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 PBXIP1Q96AQ6 731 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 CHFRQ96EP1 664 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 SNRNP25Q9BV90 132 aaKnown RBP8.96□□□□□ -0.98
COL28A1-205ENST00000453441 TRIM7Q9C029 511 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ZWILCHQ9H900 591 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ANLNQ9NQW6 1124 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 DDX56Q9NY93 547 aaKnown RBP8.96□□□□□ -0.98
COL28A1-205ENST00000453441 TBC1D30Q9Y2I9 924 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.96□□□□□ -0.98
COL28A1-205ENST00000453441 SIT1Q9Y3P8 196 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 PCDHB11Q9Y5F2 797 aa8.96□□□□□ -0.98
COL28A1-205ENST00000453441 ILVBLA1L0T0 632 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 TBC1D3BA6NDS4 549 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 GOLGA6L9A6NEM1 432 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 SHISA7A6NL88 538 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CHURC1-FNTBB4DL54 471 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 I6L893 689 aaPredicted RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 EEF2KO00418 725 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 DLL1O00548 723 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 ZSCAN12O43309 604 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 SPOPO43791 374 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 BUB1BO60566 1050 aaPredicted RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 SRGAP2O75044 1071 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 LRIG2O94898 1065 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 ATP5BP06576 529 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CHRNB1P11230 501 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 PABPC1P11940 636 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 TARSP26639 723 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 EPHB2P29323 1055 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 SSR1P43307 286 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 NAP1L1P55209 391 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 RPS24P62847 133 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 KRT81Q14533 505 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 ODF2Q5BJF6 829 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 LCE2AQ5TA79 106 aaPredicted RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CWF19L1Q69YN2 538 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 FSTL4Q6MZW2 842 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 RWDD4Q6NW29 188 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 KIAA0907Q7Z7F0 614 aaPredicted RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 DAAM2Q86T65 1068 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 C12orf40Q86WS4 652 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CCDC105Q8IYK2 499 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CARNMT1Q8N4J0 409 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 LZTR1Q8N653 840 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 NAT16Q8N8M0 369 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 RTL3Q8N8U3 475 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 KDM1BQ8NB78 822 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 FLCNQ8NFG4 579 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 TPCN2Q8NHX9 752 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 FAM71BQ8TC56 605 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 KIAA1524Q8TCG1 905 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 IGSF8Q969P0 613 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 BTBD6Q96KE9 485 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 PRRX2Q99811 253 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 ZNF670Q9BS34 389 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 DESI2Q9BSY9 194 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CHRDQ9H2X0 955 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 DHX35Q9H5Z1 703 aaKnown RBP8.95□□□□□ -0.98
COL28A1-205ENST00000453441 EPHX3Q9H6B9 360 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 TMEM248Q9NWD8 314 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 PLK2Q9NYY3 685 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 PCSK1NQ9UHG2 260 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 GGA2Q9UJY4 613 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 MUC3AQ02505 3323 aa8.95□□□□□ -0.98
COL28A1-205ENST00000453441 CCDC66A2RUB6 948 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 TMEM110-MUSTN1A8MSY1 372 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 MIF4GDA9UHW6 222 aaKnown RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 DAPK3O43293 454 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 CREB3O43889 395 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 RHOCP08134 193 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 SRPRAP08240 638 aaKnown RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 RARAP10276 462 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 HNRNPLP14866 589 aaKnown RBP eCLIP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 POLR2EP19388 210 aaKnown RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 COMTP21964 271 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 MSNP26038 577 aaKnown RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 HLA-FP30511 346 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 OR1E1P30953 314 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 SERPINB6P35237 376 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 SLC6A11P48066 632 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 SGSHP51688 502 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 NDST2P52849 883 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 GEMIN4P57678 1058 aaKnown RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 YBEYP58557 167 aaPredicted RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 KDSRQ06136 332 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 PLEKHG6Q3KR16 790 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 PARP15Q460N3 678 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 RAB6CQ53S08 254 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 PPP6R3Q5H9R7 873 aaPredicted RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 EOGTQ5NDL2 527 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 SDE2Q6IQ49 451 aa8.94□□□□□ -0.98
COL28A1-205ENST00000453441 CYP4V2Q6ZWL3 525 aaPredicted RBP8.94□□□□□ -0.98
COL28A1-205ENST00000453441 C14orf80Q86SX3 495 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms