RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 ANO7Q6IWH7 933 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 SERPINA13PQ6UXR4 307 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 KDM1BQ8NB78 822 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 OR52K2Q8NGK3 314 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 ANAPC7Q9UJX3 599 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 OR51B4Q9Y5P0 310 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 RAD54BQ9Y620 910 aa20.49■□□□□ 0.87
COL9A3-202ENST00000452372 CKAP5Q14008 2032 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 TCRBV21S2A2A0A5A6 115 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 MYO1FO00160 1098 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 PRPSAP2O60256 369 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 SRPRAP08240 638 aaKnown RBP20.48■□□□□ 0.87
COL9A3-202ENST00000452372 TMEM253P0C7T8 217 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 OR1E1P30953 314 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 PCK1P35558 622 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 ECT2LQ008S8 904 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 STARD3Q14849 445 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 FNDC3BQ53EP0 1204 aaKnown RBP20.48■□□□□ 0.87
COL9A3-202ENST00000452372 C6orf118Q5T5N4 469 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 ERMARDQ5T6L9 678 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 RNF219Q5W0B1 726 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-202ENST00000452372 KIAA1211LQ6NV74 962 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 TFAP2DQ7Z6R9 452 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 PYROXD2Q8N2H3 581 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 NIPA2Q8N8Q9 360 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 MDGA1Q8NFP4 955 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 TBC1D31Q96DN5 1066 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 MYO19Q96H55 970 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 MRGPRX3Q96LB0 322 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 SMOC1Q9H4F8 434 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 CTTNBP2NLQ9P2B4 639 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 UVRAGQ9P2Y5 699 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 PCSK1NQ9UHG2 260 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 IP6K2Q9UHH9 426 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 ERVW-1Q9UQF0 538 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 INVSQ9Y283 1065 aa20.48■□□□□ 0.87
COL9A3-202ENST00000452372 MUC22E2RYF6 1773 aaPredicted RBP20.48■□□□□ 0.87
COL9A3-202ENST00000452372 ZBTB24O43167 697 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-202ENST00000452372 FOXD2O60548 495 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-202ENST00000452372 EPHX1P07099 455 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 RHOCP08134 193 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 RHOQP17081 205 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 PRKCHP24723 683 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 ST8SIA6P61647 398 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 SEMA3BQ13214 749 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 RWDD4Q6NW29 188 aaKnown RBP20.47■□□□□ 0.87
COL9A3-202ENST00000452372 CCDC170Q8IYT3 715 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 ZNF564Q8TBZ8 553 aaPredicted RBP20.47■□□□□ 0.87
COL9A3-202ENST00000452372 HMGB4Q8WW32 186 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 BTBD6Q96KE9 485 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 PEBP4Q96S96 227 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 EPAS1Q99814 870 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 BCCIPQ9P287 314 aaKnown RBP eCLIP20.47■□□□□ 0.87
COL9A3-202ENST00000452372 SUN2Q9UH99 717 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 NEU3Q9UQ49 428 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 PCDHGA5Q9Y5G8 931 aa20.47■□□□□ 0.87
COL9A3-202ENST00000452372 ILVBLA1L0T0 632 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 EIF3CLB5ME19 914 aaKnown RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 SYNCRIPO60506 623 aaKnown RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 LCA5LO95447 670 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 HLA-EP13747 358 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 GABRG2P18507 467 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 FECHP22830 423 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 CTSOP43234 321 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 LIMK1P53667 647 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 ZNF783Q6ZMS7 281 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 CYP4V2Q6ZWL3 525 aaPredicted RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 NLRP14Q86W24 1093 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 PSTKQ8IV42 348 aaKnown RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 PGBD3Q8N328 593 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 EIF3CQ99613 913 aaKnown RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 SNRNP25Q9BV90 132 aaKnown RBP20.46■□□□□ 0.87
COL9A3-202ENST00000452372 TPSD1Q9BZJ3 242 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 MUC3BQ9H195 1237 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 TMEM248Q9NWD8 314 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 IMPACTQ9P2X3 320 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 VPS28Q9UK41 221 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 INTUQ9ULD6 942 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 AP4E1Q9UPM8 1137 aa20.46■□□□□ 0.87
COL9A3-202ENST00000452372 A0A0D9SEW6 157 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 HTR7P34969 479 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 MPLP40238 635 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 MAPKAPK2P49137 400 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 VASPP50552 380 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-202ENST00000452372 CAMK2GQ13555 558 aaPredicted RBP20.45■□□□□ 0.86
COL9A3-202ENST00000452372 USP39Q53GS9 565 aaKnown RBP20.45■□□□□ 0.86
COL9A3-202ENST00000452372 BOLA3Q53S33 107 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 DAB2IPQ5VWQ8 1189 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 TMTC1Q8IUR5 882 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 DHX35Q9H5Z1 703 aaKnown RBP20.45■□□□□ 0.86
COL9A3-202ENST00000452372 GPATCH2LQ9NWQ4 482 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 LCMT1Q9UIC8 334 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 SLCO3A1Q9UIG8 710 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 CACNA1BQ00975 2339 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 CHD5Q8TDI0 1954 aa20.45■□□□□ 0.86
COL9A3-202ENST00000452372 PI4KAP42356 2102 aa20.44■□□□□ 0.86
COL9A3-202ENST00000452372 BCLAF3A2AJT9 711 aaKnown RBP20.44■□□□□ 0.86
COL9A3-202ENST00000452372 CREB3O43889 395 aa20.44■□□□□ 0.86
COL9A3-202ENST00000452372 BCKDHBP21953 392 aa20.44■□□□□ 0.86
COL9A3-202ENST00000452372 IL1R2P27930 398 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms