RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 AARDQ4LEZ3 155 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PDPRQ8NCN5 879 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 LINC00301Q8NCQ3 95 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 METTL6Q8TCB7 284 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NAT14Q8WUY8 206 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 RHBDF1Q96CC6 855 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GRIP2Q9C0E4 1043 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 EXD2Q9NVH0 621 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GMPPBQ9Y5P6 360 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SLC28A1O00337 649 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NCAM2O15394 837 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 HALP42357 657 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GIT2Q14161 759 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 FASTKQ14296 549 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM132DQ14C87 1099 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 INSCQ1MX18 579 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ARCQ7LC44 396 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 OR2L2Q8NH16 312 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 CDK5RAP1Q96SZ6 601 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NPAS2Q99743 824 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 AGPAT1Q99943 283 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SAR1AQ9NR31 198 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 IFT80Q9P2H3 777 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SORCS3Q9UPU3 1222 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 RRN3P2A6NIE6 340 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PRR29P0C7W0 189 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 RPA1P27694 616 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MATKP42679 507 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PPP3R1P63098 170 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 FSCN1Q16658 493 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 UBXN11Q5T124 520 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 DGLUCYQ7Z3D6 616 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 OFCC1Q8IZS5 231 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GMCL1Q96IK5 515 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PI4KBQ9UBF8 816 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MRTO4Q9UKD2 239 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 IGFALSP35858 605 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NEK3P51956 506 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 TSPAN5P62079 268 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 C11orf57Q6ZUT1 292 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PAGE2Q7Z2X7 111 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 CIR1Q86X95 450 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 C12orf56Q8IXR9 622 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF276Q8N554 614 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NXPE2Q96DL1 559 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 FAM111AQ96PZ2 611 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 IFNA21P01568 189 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 GIMD1P0DJR0 217 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 NCK1P16333 377 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 RPL5P46777 297 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PRELPP51888 382 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 CTSWP56202 376 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ATP6V0D2Q8N8Y2 350 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ANKFN1Q8N957 763 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM161BQ8NDZ6 487 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 STOML3Q8TAV4 291 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MED8Q96G25 268 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 C7orf50Q9BRJ6 194 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 CCNL1Q9UK58 526 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 APC2O95996 2303 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MYL3P08590 195 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 AIMP2Q13155 320 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MFSD7Q6UXD7 560 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SLITRK4Q8IW52 837 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 HDAC2Q92769 488 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF607Q96SK3 696 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PPP1R16BQ96T49 567 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 BTBD10Q9BSF8 475 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SLC25A23Q9BV35 468 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MTMR12Q9C0I1 747 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 SENP6Q9GZR1 1112 aaPredicted RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MROH8Q9H579 483 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 PNPLA3Q9NST1 481 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 CATSPERZQ9NTU4 200 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 THAP1Q9NVV9 213 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 AGO2Q9UKV8 859 aaKnown RBP9.07□□□□□ -0.96
NIPBL-202ENST00000448238 C15orf41Q9Y2V0 281 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 MAU2Q9Y6X3 613 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 AQP5P55064 265 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 TTMPQ5BVD1 217 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 HID1Q8IV36 788 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 TMEM120AQ9BXJ8 343 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ISCUQ9H1K1 167 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ENY2Q9NPA8 101 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 EDARQ9UNE0 448 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 IFT52Q9Y366 437 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 ZNF175Q9Y473 711 aa9.07□□□□□ -0.96
NIPBL-202ENST00000448238 YTHDC2Q9H6S0 1430 aaKnown RBP9.06□□□□□ -0.96
NIPBL-202ENST00000448238 VILLO15195 856 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 SERPINB7O75635 380 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ACADMP11310 421 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ETS1P14921 441 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 CXCR2P25025 360 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 MBTD1Q05BQ5 628 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ATAD3CQ5T2N8 411 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PRR23CQ6ZRP0 262 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 RNF31Q96EP0 1072 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 KLHL15Q96M94 604 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 PDGFCQ9NRA1 345 aa9.06□□□□□ -0.96
NIPBL-202ENST00000448238 ACOT9Q9Y305 439 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms