RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 SLC4A7Q9Y6M7 1214 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PATJQ8NI35 1801 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 GOLGA6L7A0A1B0GV03 622 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TMEM120BA0PK00 339 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TRIM43BA6NCK2 446 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ERICH4A6NGS2 130 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 DRGXA6NNA5 263 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 KIAA0754O94854 1291 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SUN1O94901 812 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZWINTO95229 277 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 IGLV3-27P01718 113 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CTSAP10619 480 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 NEFHP12036 1026 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 CDC25CP30307 473 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 IFNAR2P48551 515 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SLC18A1P54219 525 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 GPX6P59796 221 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 IL10RBQ08334 325 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MGAT5Q09328 741 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF177Q13360 481 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 MPP3Q13368 585 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 HNRNPDQ14103 355 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF235Q14590 738 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 KCTD19Q17RG1 926 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 TNFAIP8L3Q5GJ75 292 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 RASIP1Q5U651 963 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MARC1Q5VT66 337 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 ADGRD1Q6QNK2 874 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TMC7Q7Z402 723 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TRABD2AQ86V40 505 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 EXOC3L1Q86VI1 746 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PPHLN1Q8NEY8 458 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 USP33Q8TEY7 942 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 SLC44A1Q8WWI5 657 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TTC17Q96AE7 1141 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TRIM43Q96BQ3 446 aaPredicted RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 ZNF599Q96NL3 588 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PLCD4Q9BRC7 762 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 HTATIP2Q9BUP3 242 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 FSD1LQ9BXM9 530 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 IL22Q9GZX6 179 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MAGEH1Q9H213 219 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 PPANQ9NQ55 473 aaKnown RBP6.16□□□□□ -1.42
VPS50-205ENST00000441602 VPS45Q9NRW7 570 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 LZTS1Q9Y250 596 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 TTLL3Q9Y4R7 772 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 INSL5Q9Y5Q6 135 aa6.16□□□□□ -1.42
VPS50-205ENST00000441602 MICAL3Q7RTP6 2002 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 TCRBV9S1A1TA0A576 114 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 ZNF840PA6NDX5 716 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 ZBTB24O43167 697 aaPredicted RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 CLDN11O75508 207 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 FGF18O76093 207 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 EFEMP2O95967 443 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 VIMP08670 466 aaKnown RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 ATF6P18850 670 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 CA4P22748 312 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 MGAT1P26572 445 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 PAPOLAP51003 745 aaKnown RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 CDH4P55283 916 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 OXCT1P55809 520 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 ITKQ08881 620 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 TWF1Q12792 350 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 POLD3Q15054 466 aaPredicted RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 MSS51Q4VC12 460 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 PIK3R6Q5UE93 754 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 STEAP4Q687X5 459 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 RSPO2Q6UXX9 243 aaPredicted RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 CHST9Q7L1S5 443 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 OTOP2Q7RTS6 562 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 CAND1Q86VP6 1230 aaKnown RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 NLRP14Q86W24 1093 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 NPWQ8N729 165 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 PTCD2Q8WV60 388 aaKnown RBP6.15□□□□□ -1.42
VPS50-205ENST00000441602 ATP2A3Q93084 1043 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 CHMP6Q96FZ7 201 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 TSNARE1Q96NA8 513 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 IL12RB2Q99665 862 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 TBL1YQ9BQ87 522 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 PRKD2Q9BZL6 878 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 OSER1Q9NX31 292 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 PTPRDP23468 1912 aa6.15□□□□□ -1.42
VPS50-205ENST00000441602 IGLV3-10A0A075B6K4 115 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.15□□□□□ -1.43
VPS50-205ENST00000441602 PRPF4O43172 522 aaKnown RBP eCLIP6.15□□□□□ -1.43
VPS50-205ENST00000441602 ADAM12O43184 909 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 GJB5O95377 273 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 CXCL14O95715 111 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 RHOCP08134 193 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 PRKCHP24723 683 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 MAGEA3P43357 314 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 UBE3AQ05086 875 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 FRG1Q14331 258 aaKnown RBP6.15□□□□□ -1.43
VPS50-205ENST00000441602 ARHGAP15Q53QZ3 475 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 GKAP1Q5VSY0 366 aaPredicted RBP6.15□□□□□ -1.43
VPS50-205ENST00000441602 UNC5AQ6ZN44 842 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 C14orf80Q86SX3 495 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 RASSF3Q86WH2 238 aa6.15□□□□□ -1.43
VPS50-205ENST00000441602 ARHGAP12Q8IWW6 846 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms