RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ANAPC4Q9UJX5 808 aa3.87□□□□□ -1.79
VPS41-207ENST00000439468 AFG3L2Q9Y4W6 797 aa3.87□□□□□ -1.79
VPS41-207ENST00000439468 SPATA31A1Q5TZJ5 1347 aa3.87□□□□□ -1.79
VPS41-207ENST00000439468 C3orf70A6NLC5 250 aaPredicted RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 FGBP02675 491 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ENO1P06733 434 aaKnown RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 XBP1P17861 261 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 GGT5P36269 586 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 SOX2P48431 317 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 YPEL5P62699 121 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MPP1Q00013 466 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ZBTB16Q05516 673 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 TBX2Q13207 712 aaPredicted RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 ALKBH1Q13686 389 aaKnown RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 SIM2Q14190 667 aaPredicted RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 RALBP1Q15311 655 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 AP5B1Q2VPB7 878 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ANXA2RQ3ZCQ2 193 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ZNF260Q3ZCT1 412 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 FBXO43Q4G163 708 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 RUNDC3AQ59EK9 446 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MEX3CQ5U5Q3 659 aaKnown RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 NAPEPLDQ6IQ20 393 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 RTL10Q7L3V2 364 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MAATS1Q7Z4T9 603 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MDGA2Q7Z553 956 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MRPL10Q7Z7H8 261 aaKnown RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 SCN4BQ8IWT1 228 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 TEX19Q8NA77 164 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ST8SIA4Q92187 359 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ATP2A3Q93084 1043 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 HIC2Q96JB3 615 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 NPAS1Q99742 590 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 UBA5Q9GZZ9 404 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 MROH8Q9H579 483 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 SLC22A11Q9NSA0 550 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 SMC4Q9NTJ3 1288 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 HDAC6Q9UBN7 1215 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 SLC25A13Q9UJS0 675 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 ARHGAP26Q9UNA1 814 aa3.86□□□□□ -1.79
VPS41-207ENST00000439468 SIRT4Q9Y6E7 314 aaPredicted RBP3.86□□□□□ -1.79
VPS41-207ENST00000439468 TCRBV7S3A2A0A539 114 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SAC3D1A6NKF1 404 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 C17orf100A8MU93 164 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SOCS2O14508 198 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SYN3O14994 580 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ANP32CO43423 234 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 PKMP14618 531 aaKnown RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 TACR3P29371 465 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 PGM1P36871 562 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 MVDP53602 400 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 POLGP54098 1239 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 ADPRHP54922 357 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ARHGAP8P85298 464 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.85□□□□□ -1.79
VPS41-207ENST00000439468 GALNT2Q10471 571 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 DDX10Q13206 875 aaKnown RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 MTA1Q13330 715 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 THOC5Q13769 683 aaKnown RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 RBMS2Q15434 407 aaKnown RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 NFIL3Q16649 462 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 TMEM88Q6PEY1 159 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SLC30A9Q6PML9 568 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 TMEM217Q8N7C4 229 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ARL14EPQ8N8R7 260 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 Q8N9P0 234 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 PIGOQ8TEQ8 1089 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 RUFY2Q8WXA3 655 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ZUFSPQ96AP4 578 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 FCRL5Q96RD9 977 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 LBHD1Q9BQE6 289 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 SENP7Q9BQF6 1050 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 CLSTN3Q9BQT9 956 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 RNF26Q9BY78 433 aaPredicted RBP3.85□□□□□ -1.79
VPS41-207ENST00000439468 AGXT2Q9BYV1 514 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 TRIM2Q9C040 744 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 TMEM184CQ9NVA4 438 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 TMLHEQ9NVH6 421 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 ARL15Q9NXU5 204 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SLC13A4Q9UKG4 626 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 GDAQ9Y2T3 454 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 PKP3Q9Y446 797 aa3.85□□□□□ -1.79
VPS41-207ENST00000439468 SLC22A23A1A5C7 686 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 FAM90A7PA6NKC0 464 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 SH2D7A6NKC9 451 aaPredicted RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 FAM90A22PA8MWA6 464 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 FAM90A12PA8MX19 464 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 FAM90A23PA8MXZ1 464 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 MBD4O95243 580 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 WEE2P0C1S8 567 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 CYP4B1P13584 511 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 SCP2P22307 547 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 PRKCHP24723 683 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 GSTM2P28161 218 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 HOXD9P28356 352 aaPredicted RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 TYK2P29597 1187 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 HOXA7P31268 230 aaPredicted RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 HNF1BP35680 557 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 NR4A2P43354 598 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms