RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 SLC6A4P31645 630 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 ARRB1P49407 418 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 SNX16P57768 344 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 RACK1P63244 317 aaKnown RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 CDK17Q00537 523 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 ECT2LQ008S8 904 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 SULT2A1Q06520 285 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 ELAVL3Q14576 367 aaKnown RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 DCAF6Q58WW2 860 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 MS4A13Q5J8X5 152 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 PITRM1Q5JRX3 1037 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 TTC39BQ5VTQ0 682 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 NCEH1Q6PIU2 408 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 LAYNQ6UX15 382 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 CCNI2Q6ZMN8 369 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 ENOSF1Q7L5Y1 443 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 TAC4Q86UU9 113 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 CREBRFQ8IUR6 639 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 MMAAQ8IVH4 418 aaKnown RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 ARHGEF19Q8IW93 802 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 CFAP52Q8N1V2 620 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 KDM1BQ8NB78 822 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 OR2T34Q8NGX1 318 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 SPATA20Q8TB22 786 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 WFDC5Q8TCV5 224 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 CLEC4CQ8WTT0 213 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 KAT5Q92993 513 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 TTC17Q96AE7 1141 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 BTN2A3PQ96KV6 586 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 FCRL2Q96LA5 508 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 FAM81BQ96LP2 452 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 NUCKS1Q9H1E3 243 aaKnown RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 RSPH9Q9H1X1 276 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 SYNCQ9H7C4 482 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 POPDC2Q9HBU9 364 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 UBE2TQ9NPD8 197 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 GDF3Q9NR23 364 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 KIAA1522Q9P206 1035 aaPredicted RBP8.02□□□□□ -1.13
VPS50-204ENST00000438395 MAN1B1Q9UKM7 699 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 FZD4Q9ULV1 537 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 NAALADL1Q9UQQ1 740 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 PCDH15Q96QU1 1955 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 ITPR1Q14643 2758 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 FREM2Q5SZK8 3169 aa8.02□□□□□ -1.13
VPS50-204ENST00000438395 TNRC6BQ9UPQ9 1833 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 CABIN1Q9Y6J0 2220 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SYNJ2BP-COX16A0A087WUM0 186 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 A0A1W2PP55 124 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 TARSL2A2RTX5 802 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 FAM221BA6H8Z2 402 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 E5RJQ4 531 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 H0Y8X5 98 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 VILLO15195 856 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 MID1O15344 667 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 TRUB2O95900 331 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 IL1BP01584 269 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 ITGAVP06756 1048 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 ATXN1LP0C7T5 689 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 RHOQP17081 205 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 TACR2P21452 398 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 GNA15P30679 374 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SLC8A1P32418 973 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 HNF1BP35680 557 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 STX17P56962 302 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 YWHAZP63104 245 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 IL9RQ01113 521 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 BNC1Q01954 994 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 MTA1Q13330 715 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 MEA1Q16626 185 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 ZC3H12AQ5D1E8 599 aaKnown RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 FAM46CQ5VWP2 391 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 RAP1GAP2Q684P5 730 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 NADSYN1Q6IA69 706 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 TTI2Q6NXR4 508 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 DENND1BQ6P3S1 775 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 FOXR2Q6PJQ5 311 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SND1Q7KZF4 910 aaKnown RBP eCLIP8.01□□□□□ -1.13
VPS50-204ENST00000438395 BEND5Q7L4P6 421 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 KIAA0907Q7Z7F0 614 aaPredicted RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 OR14C36Q8NHC7 312 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 C1orf216Q8TAB5 229 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 STK32AQ8WU08 396 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SERAC1Q96JX3 654 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SLC6A18Q96N87 628 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 RPRD1AQ96P16 312 aaPredicted RBP8.01□□□□□ -1.13
VPS50-204ENST00000438395 MTG2Q9H4K7 406 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 THAP9Q9H5L6 903 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 DDIT4Q9NX09 232 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 COX16Q9P0S2 106 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SLC25A13Q9UJS0 675 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 ERVW-1Q9UQF0 538 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 BTBD3Q9Y2F9 522 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 DMXL2Q8TDJ6 3036 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 ZFHX4Q86UP3 3567 aa8.01□□□□□ -1.13
VPS50-204ENST00000438395 SPEGQ15772 3267 aa8□□□□□ -1.13
VPS50-204ENST00000438395 A0A1B0GVM2 712 aa8□□□□□ -1.13
VPS50-204ENST00000438395 A0A1W2PPC4 97 aa8□□□□□ -1.13
VPS50-204ENST00000438395 CDC14CA4D256 554 aa8□□□□□ -1.13
VPS50-204ENST00000438395 TCAF2A6NFQ2 919 aa8□□□□□ -1.13
VPS50-204ENST00000438395 EIF4E1BA6NMX2 242 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms