RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PAPOLAP51003 745 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 BASP1P80723 227 aaKnown RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CAV1Q03135 178 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 IZUMO3Q5VZ72 239 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 TPGS1Q6ZTW0 290 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 PRUNE1Q86TP1 453 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 SETD3Q86TU7 594 aaPredicted RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 TP53INP2Q8IXH6 220 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 DEPDC1BQ8WUY9 529 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 SEC14L1Q92503 715 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 BHMTQ93088 406 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 OTUB2Q96DC9 234 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 RTP4Q96DX8 246 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 MYEOVQ96EZ4 313 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 KLC2Q9H0B6 622 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 MUC3BQ9H195 1237 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 MAGEH1Q9H213 219 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 USP29Q9HBJ7 922 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CLEC1BQ9P126 229 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 KLHL8Q9P2G9 620 aaPredicted RBP17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 ANAPC5Q9UJX4 755 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 CDH7Q9ULB5 785 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 HPCAL4Q9UM19 191 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 NFU1Q9UMS0 254 aa17.54■□□□□ 0.4
CCDC28B-202ENST00000421922 A0A0A0MRY4 1105 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 OPHN1O60890 802 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 GCATO75600 419 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 LUC7L3O95232 432 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 GBP2P32456 591 aaPredicted RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 IFNAR2P48551 515 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 SGSHP51688 502 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 PLTPP55058 493 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 KCTD19Q17RG1 926 aaPredicted RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 AFMIDQ63HM1 303 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 IL31Q6EBC2 164 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 ITPRIPL1Q6GPH6 555 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 CCNI2Q6ZMN8 369 aaPredicted RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 MFN1Q8IWA4 741 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 EIF1ADQ8N9N8 165 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 PABPC5Q96DU9 382 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 HMCESQ96FZ2 354 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 SPATA13Q96N96 652 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 TSGA13Q96PP4 275 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 VAT1Q99536 393 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 HAUS2Q9NVX0 235 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 IPO11Q9UI26 975 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 TPX2Q9ULW0 747 aaKnown RBP17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 NEU2Q9Y3R4 380 aa17.53■□□□□ 0.4
CCDC28B-202ENST00000421922 ILVBLA1L0T0 632 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 C5orf60A6NFR6 353 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 KCNK1O00180 336 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 DNALI1O14645 258 aaPredicted RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 SEC31AO94979 1220 aaKnown RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 RPL22P35268 128 aaKnown RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 TNNT3P45378 269 aaPredicted RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 LMAN1P49257 510 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 CLCN6P51797 869 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 OXCT1P55809 520 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 GNA12Q03113 381 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 ADGRE1Q14246 886 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 CTC1Q2NKJ3 1217 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 FAM78AQ5JUQ0 283 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 MPP7Q5T2T1 576 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 ARTNQ5T4W7 220 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF783Q6ZMS7 281 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 GSPT2Q8IYD1 628 aaKnown RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 KIAA1958Q8N8K9 716 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 ZNF557Q8N988 423 aaPredicted RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 GLIS1Q8NBF1 620 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 CCDC110Q8TBZ0 833 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 E2F7Q96AV8 911 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 ASB16Q96NS5 453 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 NECTIN4Q96NY8 510 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 SPON2Q9BUD6 331 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 THG1LQ9NWX6 298 aaKnown RBP17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 TRHDEQ9UKU6 1024 aa17.52■□□□□ 0.4
CCDC28B-202ENST00000421922 PRUNE2Q8WUY3 3088 aa17.52■□□□□ 0.39
CCDC28B-202ENST00000421922 E7EVH7 732 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ITGA8P53708 1063 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ANKRD20A2Q5SQ80 823 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ANKRD20A1Q5TYW2 823 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ANKRD20A3Q5VUR7 823 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 RNF219Q5W0B1 726 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 BBS5Q8N3I7 341 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 TAB3Q8N5C8 712 aaPredicted RBP17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 BPIFB1Q8TDL5 484 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 FMO2Q99518 471 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 NOL6Q9H6R4 1146 aaKnown RBP17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ATP13A1Q9HD20 1204 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ARFGAP3Q9NP61 516 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 RAB6BQ9NRW1 208 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 DUS2Q9NX74 493 aaKnown RBP17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 OBP2AQ9NY56 170 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 ZNF212Q9UDV6 495 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 CDH22Q9UJ99 828 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 TTLL3Q9Y4R7 772 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 WNT6Q9Y6F9 365 aa17.51■□□□□ 0.39
CCDC28B-202ENST00000421922 TTC28Q96AY4 2481 aa17.5■□□□□ 0.39
CCDC28B-202ENST00000421922 GOLGA6CA6NDK9 693 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms