RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SNX32Q86XE0 403 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SLC25A41Q8N5S1 370 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 DAGLBQ8NCG7 672 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 EMILIN2Q9BXX0 1053 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 EML1O00423 815 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 RGS10O43665 173 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 BBOX1O75936 387 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 NMT1P30419 496 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 RORAP35398 523 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 YWHAZP63104 245 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 MPP5Q8N3R9 675 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 ATL1Q8WXF7 558 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TCEAL7Q9BRU2 100 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CAPN6Q9Y6Q1 641 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 OR6B1O95007 311 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 LYNP07948 512 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TMEM132DQ14C87 1099 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TMEM17Q86X19 198 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CREB3L1Q96BA8 519 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 DPY30Q9C005 99 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 DNAAF2Q9NVR5 837 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TAS2R7Q9NYW3 318 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 INVSQ9Y283 1065 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SLC16A4O15374 487 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 GPD2P43304 727 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 PTPRNQ16849 979 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CPA5Q8WXQ8 436 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SHCBP1LQ9BZQ2 653 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 PTBP2Q9UKA9 531 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 MEMO1Q9Y316 297 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 COX4I1P13073 169 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 RBM34P42696 430 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SVOPLQ8N434 492 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 LRRC71Q8N4P6 559 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 INO80EQ8NBZ0 244 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 AIFM3Q96NN9 605 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CKLFQ9UBR5 152 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 KDM6AO15550 1401 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 STOMP27105 288 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 COA7Q96BR5 231 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SSU72Q9NP77 194 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TRHDEQ9UKU6 1024 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 MAN2B2Q9Y2E5 1009 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 PCDHA10Q9Y5I2 948 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 MLYCDO95822 493 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 ALDH3A2P51648 485 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 METTL21CQ5VZV1 264 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 STK40Q8N2I9 435 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TMC2Q8TDI7 906 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 AFG1LQ8WV93 481 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 TEFMQ96QE5 360 aaKnown RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 ADGRE3Q9BY15 652 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SLC39A8Q9C0K1 460 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CLPBQ9H078 707 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 SMPD3Q9NY59 655 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 GNG14A0A1W2PPG7 69 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 FOXN3O00409 490 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 FBXO21O94952 628 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 POLD2P49005 469 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CDH17Q12864 832 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 C1orf189Q5VU69 101 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 DPY19L2Q6NUT2 758 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CREG2Q8IUH2 290 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 CCDC115Q96NT0 180 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 RMDN3Q96TC7 470 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 JPH1Q9HDC5 661 aaPredicted RBP13.09□□□□□ -0.31
COL6A3-206ENST00000409809 PPP2R3BQ9Y5P8 575 aa13.09□□□□□ -0.31
COL6A3-206ENST00000409809 MMP14P50281 582 aa13.08□□□□□ -0.31
COL6A3-206ENST00000409809 RRP1BQ14684 758 aaKnown RBP13.08□□□□□ -0.31
COL6A3-206ENST00000409809 SRFBP1Q8NEF9 429 aaKnown RBP13.08□□□□□ -0.31
COL6A3-206ENST00000409809 S100A14Q9HCY8 104 aa13.08□□□□□ -0.31
COL6A3-206ENST00000409809 USP6P35125 1406 aa13.08□□□□□ -0.31
COL6A3-206ENST00000409809 DPPA5A6NC42 116 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 USP46P62068 366 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 ACSBG1Q96GR2 724 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 TRIM2Q9C040 744 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 KCTD10Q9H3F6 313 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 ENTPD5O75356 428 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 DNAJB5O75953 348 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 MSR1P21757 451 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 GRIA3P42263 894 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 NCCRP1Q6ZVX7 275 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-206ENST00000409809 CHPFQ8IZ52 775 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 FNDC5Q8NAU1 212 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 UBE2E3Q969T4 207 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 SAMD4AQ9UPU9 718 aaKnown RBP13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PGDP52209 483 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PLEKHG6Q3KR16 790 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 FAM131AQ6UXB0 335 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 GATAD2AQ86YP4 633 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 CAMKK1Q8N5S9 505 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PACRGLQ8N7B6 248 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 ZNF512BQ96KM6 892 aaPredicted RBP13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PHF12Q96QT6 1004 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 FUCA2Q9BTY2 467 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 GTPBP2Q9BX10 602 aaKnown RBP13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PSME3P61289 254 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 PKN1Q16512 942 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 MEA1Q16626 185 aa13.08□□□□□ -0.32
COL6A3-206ENST00000409809 HIPK1Q86Z02 1210 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms