RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 C14orf80Q86SX3 495 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 RASSF3Q86WH2 238 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 FAM126BQ8IXS8 530 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 ZNF784Q8NCA9 323 aaPredicted RBP20.55■□□□□ 0.88
USP39-204ENST00000409766 ZNF419Q96HQ0 510 aaPredicted RBP20.55■□□□□ 0.88
USP39-204ENST00000409766 LRRC37BQ96QE4 947 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.55■□□□□ 0.88
USP39-204ENST00000409766 MYLK2Q9H1R3 596 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 UBP1Q9NZI7 540 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 NYNRINQ9P2P1 1898 aaKnown RBP20.55■□□□□ 0.88
USP39-204ENST00000409766 TET1Q8NFU7 2136 aa20.55■□□□□ 0.88
USP39-204ENST00000409766 FAM92AA1XBS5 289 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 OR6C75A6NL08 312 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 C2CD2LO14523 706 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 DCTN3O75935 186 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ITGA2BP08514 1039 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 NEFHP12036 1026 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 FGFR3P22607 806 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 HNRNPH1P31943 449 aaKnown RBP20.54■□□□□ 0.88
USP39-204ENST00000409766 GATMP50440 423 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 AFMIDQ63HM1 303 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ARHGAP18Q8N392 663 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 RTL3Q8N8U3 475 aaKnown RBP20.54■□□□□ 0.88
USP39-204ENST00000409766 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.54■□□□□ 0.88
USP39-204ENST00000409766 USP33Q8TEY7 942 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ZNF669Q96BR6 464 aaPredicted RBP20.54■□□□□ 0.88
USP39-204ENST00000409766 B3GALT6Q96L58 329 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 IL12RB2Q99665 862 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 APOL2Q9BQE5 337 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 MARCH5Q9NX47 278 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 GMIPQ9P107 970 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 SIRPGQ9P1W8 387 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 FAM237BA0A1B0GVD1 139 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 MAGEB16A2A368 324 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 CFAP73A6NFT4 308 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 MATN3O15232 486 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 TGDSO95455 350 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 HTRA3P83110 453 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ANKRD20A4Q4UJ75 823 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 PIK3R6Q5UE93 754 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 NAPEPLDQ6IQ20 393 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ZNF280DQ6N043 979 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 RFWD2Q8NHY2 731 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 ERP27Q96DN0 273 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 MECRQ9BV79 373 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 IL22Q9GZX6 179 aa20.54■□□□□ 0.88
USP39-204ENST00000409766 TPP1O14773 563 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 PSMD3O43242 534 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 ALDH2P05091 517 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 GP5P40197 560 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 SKIV2L2P42285 1042 aaKnown RBP20.53■□□□□ 0.88
USP39-204ENST00000409766 STXBP5Q5T5C0 1151 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 CYB5D1Q6P9G0 228 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 CPNE1Q99829 537 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 TRIM55Q9BYV6 548 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 KLC4Q9NSK0 619 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 MPP6Q9NZW5 540 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 DOCK4Q8N1I0 1966 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 WASH4PA8MWX3 477 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 AP3B1O00203 1094 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 ATP9BO43861 1147 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 TOP3BO95985 862 aaKnown RBP20.53■□□□□ 0.88
USP39-204ENST00000409766 SLC2A3P11169 496 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 SLC11A1P49279 550 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 SLC20A2Q08357 652 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 CDH17Q12864 832 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 PDE1CQ14123 709 aaPredicted RBP20.53■□□□□ 0.88
USP39-204ENST00000409766 SMAD1Q15797 465 aaKnown RBP20.53■□□□□ 0.88
USP39-204ENST00000409766 NLRP9Q7RTR0 991 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 LINC00523Q86TU6 105 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 TRIM42Q8IWZ5 723 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 CRIPAKQ8N1N5 446 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 GPR152Q8TDT2 470 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 MFSD3Q96ES6 412 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 FCRL5Q96RD9 977 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 SEZ6LQ9BYH1 1024 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 HCSTQ9UBK5 93 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 DCTN4Q9UJW0 460 aa20.53■□□□□ 0.88
USP39-204ENST00000409766 AAR2Q9Y312 384 aaKnown RBP20.53■□□□□ 0.88
USP39-204ENST00000409766 GREB1Q4ZG55 1949 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 TPH1P17752 444 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 TCTN1Q2MV58 587 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 GRTP1Q5TC63 336 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 KYAT3Q6YP21 454 aaKnown RBP20.52■□□□□ 0.88
USP39-204ENST00000409766 ASRGL1Q7L266 308 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 ZNF683Q8IZ20 524 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 SPATA22Q8NHS9 363 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 GLOD4Q9HC38 313 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 CHRAC1Q9NRG0 131 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 TXNDC16Q9P2K2 825 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 SOX13Q9UN79 622 aa20.52■□□□□ 0.88
USP39-204ENST00000409766 MRPL42Q9Y6G3 142 aaKnown RBP20.52■□□□□ 0.88
USP39-204ENST00000409766 BIRC5O15392 142 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 SOAT2O75908 522 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 UNC5CO95185 931 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 BPGMP07738 259 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 DNAJB2P25686 324 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 YWHAQP27348 245 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 TBX4P57082 545 aa20.51■□□□□ 0.87
USP39-204ENST00000409766 RSPO2Q6UXX9 243 aaPredicted RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms