RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 RIPOR1Q6ZS17 1223 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 STRADAQ7RTN6 431 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PAF1Q8N7H5 531 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 UPF1Q92900 1129 aaKnown RBP eCLIP13.67□□□□□ -0.22
VPS54-203ENST00000409558 SKA1Q96BD8 255 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NPY6RQ99463 290 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PPCSQ9HAB8 311 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NMRK2Q9NPI5 230 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NMRK1Q9NWW6 199 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 TRDMT1O14717 391 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 PLIN3O60664 434 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 C2P06681 752 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PNPLA4P41247 253 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 OR1G1P47890 313 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NME5P56597 212 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 RIPK1Q13546 671 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 GRM3Q14832 879 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NAPRTQ6XQN6 538 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 NT5DC4Q86YG4 428 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 PIWIL2Q8TC59 973 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 EPAS1Q99814 870 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 GNEQ9Y223 722 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 RUVBL2Q9Y230 463 aaKnown RBP13.67□□□□□ -0.22
VPS54-203ENST00000409558 SLC27A5Q9Y2P5 690 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 MYO7AQ13402 2215 aa13.67□□□□□ -0.22
VPS54-203ENST00000409558 SHROOM3Q8TF72 1996 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 AURKAO14965 403 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 OPHN1O60890 802 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 DHRS4L1P0CG22 281 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 FDFT1P37268 417 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PTPRCAPQ14761 206 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PARP6Q2NL67 630 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PPM1LQ5SGD2 360 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 ESRP1Q6NXG1 681 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 LAYNQ6UX15 382 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 ZDHHC17Q8IUH5 632 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PHF21BQ96EK2 531 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 TSNARE1Q96NA8 513 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 CYP2S1Q96SQ9 504 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 EBF2Q9HAK2 575 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 DLGAP2Q9P1A6 1054 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 MTF2Q9Y483 593 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 NVLO15381 856 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 GJB3O75712 270 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 ZNF865P0CJ78 1059 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 HNRNPLP14866 589 aaKnown RBP eCLIP13.66□□□□□ -0.225e-9■■■□□ 16.9
VPS54-203ENST00000409558 HDCP19113 662 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 CD68P34810 354 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 CRYBB1P53674 252 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 ANKRD20A4Q4UJ75 823 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 SPDYAQ5MJ70 313 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 C6orf163Q5TEZ5 329 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 ALKAL1Q6UXT8 129 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 AGMOQ6ZNB7 445 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 SDCCAG8Q86SQ7 713 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 SCUBE1Q8IWY4 988 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 DEFB107AQ8IZN7 70 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 ZC3H15Q8WU90 426 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 GTSE1Q9NYZ3 720 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PADI3Q9ULW8 664 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 GCKP35557 465 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 GP5P40197 560 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 OCRLQ01968 901 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 CCDC15Q0P6D6 951 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 GEN1Q17RS7 908 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 SLC39A12Q504Y0 691 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PSTKQ8IV42 348 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 ATPAF2Q8N5M1 289 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 INPP5DQ92835 1189 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 CATSPER2Q96P56 530 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 THAP1Q9NVV9 213 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 RBM22Q9NW64 420 aaKnown RBP eCLIP13.66□□□□□ -0.223e-6■■■■□ 22.6
VPS54-203ENST00000409558 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 SMAPO00193 183 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 MGEA5O60502 916 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 CRHR1P34998 444 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 GARSP41250 739 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 PKNOX1P55347 436 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PCLAFQ15004 111 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 SLC9B1Q4ZJI4 515 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 LRRC8BQ6P9F7 803 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 HPS6Q86YV9 775 aa13.66□□□□□ -0.22
VPS54-203ENST00000409558 PTCD3Q96EY7 689 aaKnown RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 MLPHQ9BV36 600 aaPredicted RBP13.66□□□□□ -0.22
VPS54-203ENST00000409558 COL1A2P08123 1366 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 DAB1O75553 588 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TSNAXIP1Q2TAA8 658 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 TEDDM1Q5T9Z0 273 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 FAM156AQ8NDB6 213 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 DQX1Q8TE96 717 aaKnown RBP13.65□□□□□ -0.22
VPS54-203ENST00000409558 VPS39Q96JC1 886 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 ELMO2Q96JJ3 720 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 LRRC40Q9H9A6 602 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 MOCS1Q9NZB8 636 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 HCSTQ9UBK5 93 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 PTPRFP10586 1907 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 OR51F1A6NGY5 319 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 C9JVG2 144 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 GLRA3O75311 464 aa13.65□□□□□ -0.22
VPS54-203ENST00000409558 FGF3P11487 239 aaPredicted RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms